View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5110-Insertion-2 (Length: 923)
Name: NF5110-Insertion-2
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110-Insertion-2 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 811; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 811; E-Value: 0
Query Start/End: Original strand, 8 - 923
Target Start/End: Complemental strand, 43868506 - 43867591
Alignment:
| Q |
8 |
aaaaactgattccaaatcatcaagttcttcatccttaacctttaacatttcatttttggatgcatccatttcattctcttgtttataatcaaacacttgt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43868506 |
aaaaactgattccaaatcatcaagttcttcatccttaacctttaacatttcacttttggatgcatccatttcattctcttgtttataatcaaacacttgt |
43868407 |
T |
|
| Q |
108 |
cctgatgaattctcttgaatctcactactcccaacaccaagtaaactttcaacattagctgcaaattcagcaagatcaacatcaaactcacagaaactat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43868406 |
cctgatgaattctcttgaatctcactactcccaacaccaagtaaactttcaacattagctgcaaattcagcaagatcaacatcaaactcacagaaactat |
43868307 |
T |
|
| Q |
208 |
ccaagtcacacatttcctcaaaatcaacagcatcatttttcacagtacaagtctctaaatcaaaagggttggcatcgaaaactggcacacgacacagcaa |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43868306 |
ccaagtcacacatttcctcaaaatcaacagcatcatttttcacagtacaagtctctaaatcaaaagggttggcatcgaaaactggcacacgacacagcaa |
43868207 |
T |
|
| Q |
308 |
ctgctcctcatcagcctcgtcaatatcaacaagtagttcttgtccttgttcttcttcacctccgagttcaggaacaagtggaagaaaactagtattgaag |
407 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43868206 |
ctgctcctcatcagcctcatcaatatcaacaagtagttcttgtccttgttcttcttcacctccgagttcaggaacaagtggaagaaaactagtattgaag |
43868107 |
T |
|
| Q |
408 |
agaactttttccttgagacgttgttgttgttgttgaatcgacgaatttttgttgtggcggggagttcttgctttccttgtgaatccactgtgccatgctt |
507 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43868106 |
agaactttttccttgagacgttgctgttgttgttgaatcgacgaatttttgttgtggcggggagttcttgctttccttgtgaatccactgtgccatgctt |
43868007 |
T |
|
| Q |
508 |
gtgctgttgttgttaccttagcagatgcggtttgaaggcgaaccctttcgtgtctacttgctaatagatttgcagagtgaaccaaattgtcacaaccatg |
607 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43868006 |
gtgctgttgttgttaccttagcagacgcggtttgaaggcgaaccctttcgtgtctacttgctaatagatttgcagagtgaaccaaattgtcacaaccatg |
43867907 |
T |
|
| Q |
608 |
acaaaggaaagcatcatctgcagcacaaaaccaacgtgctcttcttcttaaacagctatcacatgctcttgctgtcttggctcccaaggcacctgcatct |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43867906 |
acaaaggaaagcatcatctgcagcacaaaaccaacgtgctcttcttcttaaacagctatcacatgctcttgctgtcttggctcccaaggcacctgcatct |
43867807 |
T |
|
| Q |
708 |
gcatcacctttcatgtctataatcatagaatataactaaactatattgttttatgtcnnnnnnnnnnnnntgattcaattaatggtttgtgtttgttgaa |
807 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
43867806 |
gcatcacctttcatgtctataatcatagaatataactaaactatattgttttatgtc------aaaaaaatgattcaattaatggtttgtgtttgttgaa |
43867713 |
T |
|
| Q |
808 |
actagacaatgtgatgaaggagacacactagtgtcagtaggtac------nnnnnnnncttctctctgcccatgcacttttggtaatttgctacaggaat |
901 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43867712 |
actagacaatgtgatgaaggagacacactagtgtcagtaggtactttttttttttttttttctctctgcccatgcacttttggtaatttgctacaggaat |
43867613 |
T |
|
| Q |
902 |
attaatggaggttaatgggacc |
923 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
43867612 |
attaatggaggttaatgggacc |
43867591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 596 - 649
Target Start/End: Original strand, 50056084 - 50056137
Alignment:
| Q |
596 |
gtcacaaccatgacaaaggaaagcatcatctgcagcacaaaaccaacgtgctct |
649 |
Q |
| |
|
||||||| | ||||| || ||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
50056084 |
gtcacaagcttgacagagaaaagcatcatcagcagcacaataccaacgtgctct |
50056137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University