View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5110-Insertion-3 (Length: 913)

Name: NF5110-Insertion-3
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5110-Insertion-3
NF5110-Insertion-3
[»] chr3 (13 HSPs)
chr3 (564-913)||(6072841-6073185)
chr3 (220-853)||(6089250-6089886)
chr3 (74-853)||(6113412-6114193)
chr3 (276-662)||(6079937-6080325)
chr3 (74-781)||(6120304-6121007)
chr3 (74-293)||(6069065-6069281)
chr3 (729-824)||(6077024-6077119)
chr3 (74-183)||(6091236-6091344)
chr3 (72-106)||(6073188-6073222)
chr3 (875-912)||(6089168-6089205)
chr3 (875-912)||(6114238-6114275)
chr3 (875-912)||(6121128-6121165)
chr3 (80-141)||(31290554-31290615)
[»] chr7 (1 HSPs)
chr7 (92-148)||(7235796-7235852)
[»] scaffold0003 (2 HSPs)
scaffold0003 (93-152)||(103083-103142)
scaffold0003 (93-127)||(108167-108201)
[»] chr5 (2 HSPs)
chr5 (90-141)||(29490052-29490103)
chr5 (92-129)||(26316083-26316120)
[»] chr1 (1 HSPs)
chr1 (658-732)||(12809441-12809515)


Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-145; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-145
Query Start/End: Original strand, 564 - 913
Target Start/End: Complemental strand, 6073185 - 6072841
Alignment:
Q  564 atttacatatataagtatttgataaagaacgataataaaggcaaaatacctacgtatccatgatcaaacacaaactttaagcactgttgttattatatat 663  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  6073185 atttacatatataagtatttgataaagaacgataataaaggcaaaatacctacgtatccatgatcagacacaaactttaagcactgttgttattatatat 6073086  T
Q  664 gatgataaatttggcaagttcaccaaacc-ttttcaagtaataatgtattaagttctcgtctccacattgttgttttcaactcggcaattaactaaactt 762  Q
    || |||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||| |||||| ||||||||| |||||||||||||| ||    
T  6073085 gaagataaatttggcaagttcactaaacctttttcaagtaataatgtattaagttatcgtctccatattgttcttttcaactgggcaattaactaaattt 6072986  T
Q  763 ataataaaagcaataaatttgggggattttacaagattgattgtttgtgaat-aaaaaataatcctttttaacaaattgatgacgacaattaggatcctt 861  Q
    |||||||||||| ||||||||||||||||||||||||||       || ||| ||||||||||  |||||||||||||||||||||||||||||||||||    
T  6072985 ataataaaagcagtaaatttgggggattttacaagattg-------gttaataaaaaaataatggtttttaacaaattgatgacgacaattaggatcctt 6072893  T
Q  862 cgactacatcctatatgttcctagatcaaagactatttaaggtttatactcg 913  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6072892 cgactacatcctatatgttcctagatcaaagactatttaaggtttatactcg 6072841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 220 - 853
Target Start/End: Complemental strand, 6089886 - 6089250
Alignment:
Q  220 atatgtttaatagttaagttgtaaaatagtttttatcttacttataatccaatacttttatattcatgttataaagtttttatacttgtaattgttctcg 319  Q
    ||||||||||||| ||||||| | |||| |||||| |||||  | ||||| |||| ||||||||||||| |||| ||||| ||||||||||||||||||     
T  6089886 atatgtttaataggtaagttgaacaatattttttaccttaccaacaatcctatacatttatattcatgtcataatgttttgatacttgtaattgttctca 6089787  T
Q  320 cacttcatttctattt-tgttacattttaattttatttaagaacgtcagattgtttgcttgcttctaaaagatataaaaaataagaatgtcaatacaaat 418  Q
      | |||||| ||||| | |||||||||| | || ||||||||  || || |||||||||||||||||||||||| |||||  | ||||||||||||||     
T  6089786 agcatcatttatatttctcttacattttattatt-tttaagaagctcggagtgtttgcttgcttctaaaagatatgaaaaactaaaatgtcaatacaaa- 6089689  T
Q  419 aaaattataattgtctattgcagtaacgatacatgtcttagttgattgcttatttttgtgtgttgtattgaaattagc---gaat--ttatctatgact- 512  Q
       |||||||||| |||||||| |||   ||||| ||||| ||   || |||||||||| | ||||||| ||||||     ||||  ||||||||||||     
T  6089688 ---attataattggctattgcaataattgtacatatcttaattatatgtttatttttgtatattgtattcaaattaaattagaatgtttatctatgactc 6089592  T
Q  513 tatgaaccaagctcattttttcatgtgttatagaaatacttgtgatttaaaatttacatatataagtatttgataaagaacgataataaaggcaaaatac 612  Q
    |||||||||||| || |||| | ||||||| | || |||||||||| ||||||||| |||||  |||||||| |||| ||| ||| ||||| | ||| |     
T  6089591 tatgaaccaagcccagttttccttgtgttaaaaaattacttgtgatgtaaaatttatatataccagtatttgttaaaaaactatagtaaagactaaagag 6089492  T
Q  613 ctacgtatccatgatcaaacacaaactttaagcactgttgttattatatatgatgataaatttggcaagttcaccaaaccttttcaagtaataatgtatt 712  Q
    ||| |||||| | |||||| ||||| |||||| |   |||||||||||||||||||||||||||| |||| |||||||  ||||||||||||||  |  |    
T  6089491 ctaagtatccctaatcaaatacaaaatttaagta---ttgttattatatatgatgataaatttggaaagtgcaccaaatattttcaagtaataaaattgt 6089395  T
Q  713 aagttctcgtctccacattg----ttgttttcaactcggcaattaactaaacttataataaaagcaataaatttgggggattttacaagattgattgttt 808  Q
    ||||| || ||||||||| |    |||||||||||| || ||||| |||||||||||||||||| |||||||| | ||  ||||| ||||||| || |||    
T  6089394 aagttatcctctccacatggattattgttttcaactaggtaattagctaaacttataataaaagaaataaattggaggttttttaaaagattggtttttt 6089295  T
Q  809 gtgaataaaaaataatcctttttaacaaattgatgacgacaatta 853  Q
    |  |||||||||||||  |||  |||| |||||||| ||| ||||    
T  6089294 gcaaataaaaaataatggtttgaaacatattgatgaagacgatta 6089250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 74 - 853
Target Start/End: Original strand, 6113412 - 6114193
Alignment:
Q  74 agaaccttgtagtgaaggctttgtactctaagatgatgttaatgaaatgaaataaggtagaaaataatatcattaagattgtttttcttgtctcttaata 173  Q
    ||||||||||||| | |||||||||||||||||||||| ||||||||| ||||||| |||  |||||||||||||||||||| ||| |||||| |||||     
T  6113412 agaaccttgtagtaatggctttgtactctaagatgatggtaatgaaatcaaataagatagtgaataatatcattaagattgtcttt-ttgtctattaatt 6113510  T
Q  174 ttagagatatcccnnnnnnnnnnnnnccaactc-acaacacatcagaatatgtttaatagttaagttgtaaaatagtttttatcttactta-taatccaa 271  Q
    ||||||||||| |             ||||||  || |   ||||  ||||||||||||| ||||||| ||||||||||||| |||  | | |||||| |    
T  6113511 ttagagatatcgccattttcttt---ccaactttaccatgtatcaagatatgtttaataggtaagttgaaaaatagtttttacctttatcaataatccta 6113607  T
Q  272 tacttttatattcatgttataaagtttttatacttgtaattgttctcgcacttcatttctattt-tgttacattttaattttatttaagaacgtcagatt 370  Q
    ||||||||||| ||||||||||   ||| |||||||||| |||||||  || |||||||||||| | |||||||||| | || ||||||||  ||| | |    
T  6113608 tacttttatatccatgttataataatttcatacttgtaactgttctcaaacatcatttctatttctcttacattttattatt-tttaagaagctcatagt 6113706  T
Q  371 gtttgcttgcttctaaaagatataaaaaataagaatgtcaatacaaataaaattataattgtctattgcagtaacgatacatgtcttagttgattgctta 470  Q
    ||||||||||||| |||||||||  ||||  | ||||||||||||||    ||||||||| ||||||||| |||   ||||||||||| || | || |||    
T  6113707 gtttgcttgcttcgaaaagatatggaaaactaaaatgtcaatacaaa----attataattatctattgcaataattgtacatgtcttaattaaatgttta 6113802  T
Q  471 tttttgtgtgttgtattgaaatta---gcgaa--tttatctatgact-tatgaaccaagctcattttttcatgtgttatagaaatacttgtgatttaaaa 564  Q
    ||||||||||||||||| ||||||     |||  ||||||||||||| ||||||||||||  | |||||| | || || ||||||||||||||| |||||    
T  6113803 tttttgtgtgttgtattcaaattaaattagaatgtttatctatgactctatgaaccaagcctagtttttcttatgataaagaaatacttgtgatgtaaaa 6113902  T
Q  565 tttacatatataagtatttgataaagaacgataataaaggcaaaatacctacgtatccatgatcaaacacaaactttaagcactgttgttattatatatg 664  Q
    |||||| |||  |||||||| | |||||| ||| ||||| | ||| |  || |||||| | |||||| ||||| |||| |   | || | ||||||||||    
T  6113903 tttacaaataccagtatttgttgaagaactatagtaaagacgaaagagataagtatccctaatcaaatacaaaatttagg---tattttcattatatatg 6113999  T
Q  665 atgataaatttggcaagttcaccaaaccttttcaagtaataatgtattaagttctcgtctccac----attgttgttttcaactcggcaattaactaaac 760  Q
    ||||||||||||||| || |||||||  ||||||||| ||||  |  |||||| ||||||||||    ||| || |||||||||||| |||||  |||||    
T  6114000 atgataaatttggcaggtgcaccaaatattttcaagtcataaaattataagttatcgtctccacacggattattattttcaactcggtaattagttaaac 6114099  T
Q  761 ttataataaaagcaataaatttgggggatttt-acaagattgattgtttgtgaataaaaaataatcctttttaacaaattgatgacgacaatta 853  Q
    |||||||||||| |||||||| ||    |||| | ||||||| || |||| ||||||||||||||  |||  |||| |||||||| ||| ||||    
T  6114100 ttataataaaagaaataaattgggttttttttaaaaagattgtttttttgcgaataaaaaataatggtttgaaacatattgatgaagacgatta 6114193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 276 - 662
Target Start/End: Complemental strand, 6080325 - 6079937
Alignment:
Q  276 tttatattcatgttataaagtttttatacttgtaattgttctcgcacttcatttctattt-tgttacattttaattttatttaagaacgtcagattgttt 374  Q
    |||||||||||||||||| |||||| |||||||||||||||||  || |||||||||||| | |||||||||| |||| ||||||||  || || |||||    
T  6080325 tttatattcatgttataatgtttttttacttgtaattgttctcaaacatcatttctatttctcttacattttagtttt-tttaagaaactcggagtgttt 6080227  T
Q  375 gcttgcttctaaaagatataaaaaataagaatgtcaatacaaataaaattataattgtctattgcagtaacgatacatgtcttagttgattgcttatttt 474  Q
    || ||||||||||||||||  ||||  ||||||| |||||    |||||||||||||||||||||| |||   ||||||||||| || | || |||||||    
T  6080226 gcctgcttctaaaagatatggaaaactagaatgttaatac----aaaattataattgtctattgcaataattgtacatgtcttaattaaatgtttatttt 6080131  T
Q  475 tgtgtgttgtat-----tgaaattagcgaatttatctatgact-tatgaaccaagctcattttttcatgtgttatagaaatacttgtgatttaaaattta 568  Q
    |||| | |||||     | |||||||  ||||||||||||||| || |||||||||||  |||| | ||||||||| |||||||||||||||||||||||    
T  6080130 tgtgagctgtattcaaattaaattagaaaatttatctatgactctaagaaccaagctctattttccttgtgttatacaaatacttgtgatttaaaattta 6080031  T
Q  569 catatataagtatttgataaagaacgataataaaggc-aaaatacctacgtatccatgatcaaacacaaactttaagcactgttgttattatata 662  Q
    ||||||| |||||||| |||||||| |||  |||| |  ||| | ||| |||| ||||||| || |||||||||||| | |||||||||||||||    
T  6080030 catatatcagtatttgttaaagaactatagcaaagacttaaagagctaagtattcatgatc-aatacaaactttaagtattgttgttattatata 6079937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 74 - 781
Target Start/End: Original strand, 6120304 - 6121007
Alignment:
Q  74 agaaccttgtagtgaaggctttgtactctaagatgatgttaatgaaatgaaataaggtagaaaataatatcattaagattgtttttcttgtctcttaata 173  Q
    ||||||||||||| | |||||||||||||||||||||| ||||||||| ||||||| |||  |||||||||||||||||| | ||| ||||||||||||     
T  6120304 agaaccttgtagtaatggctttgtactctaagatgatggtaatgaaatcaaataagatagtgaataatatcattaagattatcttt-ttgtctcttaatt 6120402  T
Q  174 ttagagatatcccnnnnnnnnnnnnnccaactc-acaacacatcagaatatgtttaatagttaagttgtaaaatagtttttatcttacttataatccaat 272  Q
    ||||||||||| |             ||||||  || |   ||||  ||||||||||||| ||||||| ||||||||||||  ||||   ||||||| ||    
T  6120403 ttagagatatcgccactttcttt---ccaactttaccatgtatcaagatatgtttaataggtaagttgaaaaatagttttttccttatcaataatcctat 6120499  T
Q  273 acttttatattcatgttataaagtttttatacttgtaattgttctcgcacttcatttctattt-tgttacattttaattttatttaagaacgtcagattg 371  Q
    || ||||||||||||||||||   ||| |||||||||| |||||||  || |||||||||||| | ||||||||| ||| | ||||||||  ||| | ||    
T  6120500 acatttatattcatgttataataatttcatacttgtaactgttctcaaacatcatttctatttctcttacatttt-attatttttaagaagctcatagtg 6120598  T
Q  372 tttgcttgcttctaaaagatataaaaaataagaatgtcaatacaaataaaattataattgtctattgcagtaacgatacatgtcttagttgattgcttat 471  Q
    |||| ||||| |||||||| ||  ||||  | |||||||||||    |||||||||||| | ||||||| |||   ||||||||||| || | || || |    
T  6120599 tttgtttgctactaaaagacatggaaaactaaaatgtcaatac----aaaattataattatttattgcaataattgtacatgtcttaattaaatgtttgt 6120694  T
Q  472 ttttgtgtgttgtattgaaatta---gcgaa--tttatctatgact-tatgaaccaagctcattttttcatgtgttatagaaatacttgtgatttaaaat 565  Q
    |||||||||||||||| ||||||     |||  |||||||| |||| |||||||||| | || |||| | |||| || ||||||||||||||| ||||||    
T  6120695 ttttgtgtgttgtattcaaattaaattagaatgtttatctacgactctatgaaccaaacccaattttccttgtgataaagaaatacttgtgatgtaaaat 6120794  T
Q  566 ttacatatataagtatttgataaagaacgataataaaggcaaaatacctacgtatccatgatcaaacacaaactttaagcactgttgttattatatatga 665  Q
    |||||||||  ||    || |||||||| ||| ||||| | ||| |  |  |||||| | |||||| ||||| |||| |   | |||| |||||||||||    
T  6120795 ttacatataccag----tgttaaagaactatagtaaagacgaaagagatgagtatccctaatcaaatacaaaatttagg---tattgtcattatatatga 6120887  T
Q  666 tgataaatttggcaagttcaccaaaccttttcaagtaataatgtattaagttctcgtctccac----attgttgttttcaactcggcaattaactaaact 761  Q
    ||||||||||||||||| |||||||  ||| ||||||||||  |  |||||| | ||||||||    ||| || |||||||||| | |||||  ||||||    
T  6120888 tgataaatttggcaagtgcaccaaatatttccaagtaataaaattgtaagttattgtctccacacggattattattttcaactcagtaattagttaaact 6120987  T
Q  762 tataataaaagcaataaatt 781  Q
    |||||||| || ||||||||    
T  6120988 tataataagagaaataaatt 6121007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 74 - 293
Target Start/End: Original strand, 6069065 - 6069281
Alignment:
Q  74 agaaccttgtagtgaaggctttgtactctaagatgatgttaatgaaatgaaataaggtagaaaataatatcattaagattgtttttcttgtctcttaata 173  Q
    ||||||||||||| | | |||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||| || || ||||||||||||     
T  6069065 agaaccttgtagtaatgcctttgtactctaagatgatgttaatgaaatgaaataagatagcaaataatatctttaagatt-ttctttttgtctcttaatt 6069163  T
Q  174 ttagagatatcccnnnnnnnnnnnnnccaactcacaacacatcagaatatgtttaatagttaagttgtaaaatagtttttatcttacttataatccaata 273  Q
    ||||||||||| |             | |  | || ||  ||||  ||||||||||||||||||||| ||||||||||||| |||||  ||||||| |||    
T  6069164 ttagagatatcac--cattttcttttcaattttaccacgtatcaatatatgtttaatagttaagttgaaaaatagtttttagcttaccaataatcctata 6069261  T
Q  274 cttttatattcatgttataa 293  Q
    ||||||||||||| ||||||    
T  6069262 cttttatattcatcttataa 6069281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 729 - 824
Target Start/End: Complemental strand, 6077119 - 6077024
Alignment:
Q  729 attgttgttttcaactcggcaattaactaaacttataataaaagcaataaatttgggggattttacaagattgattgtttgtgaataaaaaataat 824  Q
    ||||||||||||||||||| |||||||||||||||| ||||||| |||||||| | | | |||||||||| || ||||||| ||||||||||||||    
T  6077119 attgttgttttcaactcggtaattaactaaacttatgataaaagaaataaattggagagcttttacaagaatggttgtttgagaataaaaaataat 6077024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 74 - 183
Target Start/End: Complemental strand, 6091344 - 6091236
Alignment:
Q  74 agaaccttgtagtgaaggctttgtactctaagatgatgttaatgaaatgaaataaggtagaaaataatatcattaagattgtttttcttgtctcttaata 173  Q
    ||||||||||||| | ||||||| |||||||||||||| |||||||||  |||||| ||| |||||||||||||| |||||| | | ||||||||||||     
T  6091344 agaaccttgtagtaatggctttggactctaagatgatggtaatgaaatcgaataagatagtaaataatatcattacgattgtctgt-ttgtctcttaatt 6091246  T
Q  174 ttagagatat 183  Q
    ||||||||||    
T  6091245 ttagagatat 6091236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 106
Target Start/End: Complemental strand, 6073222 - 6073188
Alignment:
Q  72 ccagaaccttgtagtgaaggctttgtactctaaga 106  Q
    ||||||||||||| |||||||||||||||||||||    
T  6073222 ccagaaccttgtattgaaggctttgtactctaaga 6073188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 875 - 912
Target Start/End: Complemental strand, 6089205 - 6089168
Alignment:
Q  875 tatgttcctagatcaaagactatttaaggtttatactc 912  Q
    ||||||||| ||||||||||||||||| ||||||||||    
T  6089205 tatgttcctggatcaaagactatttaatgtttatactc 6089168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 875 - 912
Target Start/End: Original strand, 6114238 - 6114275
Alignment:
Q  875 tatgttcctagatcaaagactatttaaggtttatactc 912  Q
    ||||||||||||||||| ||||||||| ||||||||||    
T  6114238 tatgttcctagatcaaaaactatttaatgtttatactc 6114275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 875 - 912
Target Start/End: Original strand, 6121128 - 6121165
Alignment:
Q  875 tatgttcctagatcaaagactatttaaggtttatactc 912  Q
    ||||||||||||||||| ||||||||| ||||||||||    
T  6121128 tatgttcctagatcaaatactatttaatgtttatactc 6121165  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 141
Target Start/End: Original strand, 31290554 - 31290615
Alignment:
Q  80 ttgtagtgaaggctttgtactctaagatgatgttaatgaaatgaaataaggtagaaaataat 141  Q
    ||||||| | || ||| |||||||| || ||| |||||||||||||||||| ||||||||||    
T  31290554 ttgtagttatggttttatactctaatataatggtaatgaaatgaaataaggcagaaaataat 31290615  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 148
Target Start/End: Original strand, 7235796 - 7235852
Alignment:
Q  92 ctttgtactctaagatgatgttaatgaaatgaaataaggtagaaaataatatcatta 148  Q
    |||||||||||||||||||| ||||||||| |||||||| || ||||||||| ||||    
T  7235796 ctttgtactctaagatgatgataatgaaataaaataaggcagcaaataatattatta 7235852  T

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Target: scaffold0003 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 152
Target Start/End: Complemental strand, 103142 - 103083
Alignment:
Q  93 tttgtactctaagatgatgttaatgaaatgaaataaggtagaaaataatatcattaagat 152  Q
    ||||||||||||||||||| |||| ||||||||||||  | |||||||||| ||| ||||    
T  103142 tttgtactctaagatgatggtaatcaaatgaaataagaaataaaataatattatttagat 103083  T

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Target: scaffold0003; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 127
Target Start/End: Complemental strand, 108201 - 108167
Alignment:
Q  93 tttgtactctaagatgatgttaatgaaatgaaata 127  Q
    ||||||||||||||||||| |||||||||||||||    
T  108201 tttgtactctaagatgatggtaatgaaatgaaata 108167  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 141
Target Start/End: Original strand, 29490052 - 29490103
Alignment:
Q  90 ggctttgtactctaagatgatgttaatgaaatgaaataaggtagaaaataat 141  Q
    |||||||||||||||||| ||| || ||||||||||||||| || |||||||    
T  29490052 ggctttgtactctaagattatgatattgaaatgaaataaggcagcaaataat 29490103  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 26316083 - 26316120
Alignment:
Q  92 ctttgtactctaagatgatgttaatgaaatgaaataag 129  Q
    ||||||||||||||||| || |||||||||||||||||    
T  26316083 ctttgtactctaagatgttggtaatgaaatgaaataag 26316120  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 658 - 732
Target Start/End: Original strand, 12809441 - 12809515
Alignment:
Q  658 atatatgatgataaatttggcaagttcaccaaaccttttcaagtaataatgtattaagttctcgtctccacattg 732  Q
    ||||| ||||| | ||||||||||| |||| |||  ||||||||||||| ||| |||||| || |||||||||||    
T  12809441 atataggatgacagatttggcaagtgcacctaacagtttcaagtaataaagtaataagttatcatctccacattg 12809515  T

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