View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5110-Insertion-5 (Length: 755)

Name: NF5110-Insertion-5
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5110-Insertion-5
NF5110-Insertion-5
[»] chr5 (10 HSPs)
chr5 (8-557)||(19805455-19806005)
chr5 (558-755)||(19806735-19806932)
chr5 (327-495)||(19970009-19970177)
chr5 (629-695)||(13712271-13712337)
chr5 (630-754)||(19969602-19969729)
chr5 (327-385)||(1348343-1348401)
chr5 (640-681)||(1348047-1348088)
chr5 (329-389)||(26535614-26535674)
chr5 (329-367)||(13712824-13712862)
chr5 (713-755)||(20111942-20111984)
[»] chr3 (5 HSPs)
chr3 (631-691)||(24890843-24890903)
chr3 (321-379)||(32225896-32225954)
chr3 (631-691)||(24912761-24912821)
chr3 (607-682)||(32242140-32242215)
chr3 (309-378)||(32225358-32225427)
[»] chr6 (2 HSPs)
chr6 (607-681)||(16258561-16258635)
chr6 (327-380)||(31088865-31088918)
[»] chr1 (1 HSPs)
chr1 (327-364)||(26053732-26053769)


Alignment Details
Target: chr5 (Bit Score: 491; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 8 - 557
Target Start/End: Original strand, 19805455 - 19806005
Alignment:
Q  8 gttatgttctccccacactctcacaacctaactctcaactctttttatctcacgatcataagttgttctaaattcttggagactgaggctgactgcttcg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19805455 gttatgttctccccacactctcacaacctaactctcaactctttttatctcacgatcataagttgttctaaattcttggagactgaggctgactgcttcg 19805554  T
Q  108 acaaatgggtcgaagcagcaaaacaacgtcatgtcaaggatctccagctacactttttaccttcgatacatgcccctttagcgcctacagtcttctgctg 207  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||| |||||||||||    
T  19805555 acaaatgggtcgaagcagcaaaacaacgtcgtgtcaaggatctccagctacactttttaccttcgatacacgtccctttagcacctactgtcttctgctg 19805654  T
Q  208 caaaacacttgtggttttgggtttgacgggaatacatataggcactttgtttcatggttatattgatcttcctttgctgaaaaccctaactatgtttaat 307  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  19805655 caaaacacttgtggttctaggtttgacgggaatacatataggcactttgtttcatggttctgttgatcttcctttgctgaaaaccctaactatgtttaat 19805754  T
Q  308 attcatttggaaaatatcgaggatttcatgaaacttctttctgggtgtcccatattggagaatttgaaaactagatatgttaaaacaacaaccaatgtta 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19805755 attcatttggaaaatatcgaggatttcatgaaacttctttctgggtgtcccatattggagaatttgaaaactagatatgttaaaacaacaaccaatgtta 19805854  T
Q  408 caacgggagggaactttaaatccttatccaagttgaacaatgctgatataagattattcgaccttccgttcagagcaatttataatgtccgatttctaag 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  19805855 caacgggagggaactttaaatccttatccaagttgaacaatgctgatataagattattcgaccttccgttcagagcaatttataatgtccgatttctacg 19805954  T
Q  508 tgtacacgaggtatgatac-tttatcgtcaatattatatgagctaaatttt 557  Q
    |||||| |||||||||||| |||||| ||||||||||||||||| ||||||    
T  19805955 tgtacatgaggtatgatacttttatcatcaatattatatgagcttaatttt 19806005  T

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Target: chr5; HSP #2
Raw Score: 170; E-Value: 8e-91
Query Start/End: Original strand, 558 - 755
Target Start/End: Original strand, 19806735 - 19806932
Alignment:
Q  558 gatacattaagtcaaatattttcatttcgactaatcttatgtgtgactttgcagatggagacaaatcttgccaatgaagaaatcaatttatattacaaag 657  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19806735 gatacattaagtcaaatattttcatttcgactaaccttatgtgtgactttgcagatggagacaaatcttgccaatgaagaaatcaatttatattacaaag 19806834  T
Q  658 gctttccagtgtttgaaaacttaaccgaccttcatctatcttggtgcattggcgctcatgactgggatgaggtagtgaaaatgctccaaaattgtccc 755  Q
    ||||| | ||||||||||||||||| |||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  19806835 gcttttccgtgtttgaaaacttaactgaccttcaactatcttggtgcaatggcgctcatgattgggatgaggtagtgaaaatgctccaaaattgtccc 19806932  T

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Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 327 - 495
Target Start/End: Complemental strand, 19970177 - 19970009
Alignment:
Q  327 aggatttcatgaaacttctttctgggtgtcccatattggagaatttgaaaactagatatgttaaaacaacaaccaatgttacaacgggagggaactttaa 426  Q
    ||||| ||||||||||| |||| ||||||||||| ||||||||||||||||||| || |||| |  |||   || |||||||| |||||||| | |||||    
T  19970177 aggatctcatgaaacttttttcggggtgtcccatgttggagaatttgaaaactatatgtgttgatgcaaatgccgatgttacagcgggagggtattttaa 19970078  T
Q  427 atccttatccaagttgaacaatgctgatataagattattcgaccttccgttcagagcaatttataatgt 495  Q
    | |||||||||| |||| |||||| ||||| |  ||||||||  ||||| | |||||| ||||||||||    
T  19970077 acccttatccaaattgatcaatgcagatatcaatttattcgaagttccgcttagagcagtttataatgt 19970009  T

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Target: chr5; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 629 - 695
Target Start/End: Complemental strand, 13712337 - 13712271
Alignment:
Q  629 caatgaagaaatcaatttatattacaaaggctttccagtgtttgaaaacttaaccgaccttcatcta 695  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||    
T  13712337 caatgaagaaatcaattcatattacaaaggctttcctgtgtttgaaaacttaaccaaccttcatcta 13712271  T

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Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 630 - 754
Target Start/End: Complemental strand, 19969729 - 19969602
Alignment:
Q  630 aatgaagaaatcaatttatattacaaaggctttccagtgtttgaaaacttaaccgaccttcatctatcttggtgcatt---ggcgctcatgactgggatg 726  Q
    |||| ||||||||||| ||||||||||| |||||||||||||| |||||||||| | || |  |||| |||| | | |   |||  |||||| ||||| |    
T  19969729 aatgcagaaatcaattcatattacaaagactttccagtgtttggaaacttaaccaaactgctactatgttgggggaatgaaggcattcatgagtgggacg 19969630  T
Q  727 aggtagtgaaaatgctccaaaattgtcc 754  Q
    ||||||||||||| ||||||||||||||    
T  19969629 aggtagtgaaaatactccaaaattgtcc 19969602  T

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Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 327 - 385
Target Start/End: Complemental strand, 1348401 - 1348343
Alignment:
Q  327 aggatttcatgaaacttctttctgggtgtcccatattggagaatttgaaaactagatat 385  Q
    ||||| ||||||||||||| |||||||||||   |||||||||||||||||||||||||    
T  1348401 aggatctcatgaaacttctgtctgggtgtcctcaattggagaatttgaaaactagatat 1348343  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 640 - 681
Target Start/End: Complemental strand, 1348088 - 1348047
Alignment:
Q  640 tcaatttatattacaaaggctttccagtgtttgaaaacttaa 681  Q
    |||||| |||||||||||||||||| ||||||||||||||||    
T  1348088 tcaattcatattacaaaggctttcccgtgtttgaaaacttaa 1348047  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 329 - 389
Target Start/End: Original strand, 26535614 - 26535674
Alignment:
Q  329 gatttcatgaaacttctttctgggtgtcccatattggagaatttgaaaactagatatgtta 389  Q
    ||||||||||||||| ||| ||||||||||| ||||||| ||||||  |||| ||||||||    
T  26535614 gatttcatgaaacttgtttatgggtgtcccaaattggaggatttgagtactatatatgtta 26535674  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 329 - 367
Target Start/End: Complemental strand, 13712862 - 13712824
Alignment:
Q  329 gatttcatgaaacttctttctgggtgtcccatattggag 367  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  13712862 gatttcatgaaccttctctctgggtgtcccatattggag 13712824  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 713 - 755
Target Start/End: Original strand, 20111942 - 20111984
Alignment:
Q  713 tcatgactgggatgaggtagtgaaaatgctccaaaattgtccc 755  Q
    ||||||||||| ||||||||||||||||||||| || ||||||    
T  20111942 tcatgactggggtgaggtagtgaaaatgctccagaaatgtccc 20111984  T

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Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 631 - 691
Target Start/End: Original strand, 24890843 - 24890903
Alignment:
Q  631 atgaagaaatcaatttatattacaaaggctttccagtgtttgaaaacttaaccgaccttca 691  Q
    ||||||||||||||| |||||||||||| ||||| |||||||||||||||||||| |||||    
T  24890843 atgaagaaatcaattcatattacaaaggttttcctgtgtttgaaaacttaaccgaacttca 24890903  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 321 - 379
Target Start/End: Original strand, 32225896 - 32225954
Alignment:
Q  321 atatcgaggatttcatgaaacttctttctgggtgtcccatattggagaatttgaaaact 379  Q
    ||||||||||||| | ||||||| | ||||||||||||||||| ||| |||||||||||    
T  32225896 atatcgaggatttaaagaaacttatatctgggtgtcccatattagaggatttgaaaact 32225954  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 631 - 691
Target Start/End: Original strand, 24912761 - 24912821
Alignment:
Q  631 atgaagaaatcaatttatattacaaaggctttccagtgtttgaaaacttaaccgaccttca 691  Q
    ||||||||||||||| |||||| ||||| |||||  |||||||||||| |||||| |||||    
T  24912761 atgaagaaatcaattcatattataaaggttttcctatgtttgaaaactgaaccgatcttca 24912821  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 607 - 682
Target Start/End: Complemental strand, 32242215 - 32242140
Alignment:
Q  607 tgcagatggagacaaatcttgccaatgaagaaatcaatttatattacaaaggctttccagtgtttgaaaacttaac 682  Q
    ||||||||| || || |||  ||||| |||||||||||| ||||||| |||||| ||  |||||||||||||||||    
T  32242215 tgcagatggggaaaagtctccccaatcaagaaatcaattcatattaccaaggctatcatgtgtttgaaaacttaac 32242140  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 309 - 378
Target Start/End: Complemental strand, 32225427 - 32225358
Alignment:
Q  309 ttcatttggaaaatatcgaggatttcatgaaacttctttctgggtgtcccatattggagaatttgaaaac 378  Q
    ||||||||||  ||||||||||||| | ||||||| | |||| || ||||||||| ||| ||||||||||    
T  32225427 ttcatttggatgatatcgaggatttaaagaaacttatatctgagtttcccatattagaggatttgaaaac 32225358  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 607 - 681
Target Start/End: Complemental strand, 16258635 - 16258561
Alignment:
Q  607 tgcagatggagacaaatcttgccaatgaagaaatcaatttatattacaaaggctttccagtgtttgaaaacttaa 681  Q
    ||||||||| || || |||  ||||| |||||||||||| ||||||| ||||||  || ||||||||||||||||    
T  16258635 tgcagatggggaaaagtctccccaatcaagaaatcaattcatattaccaaggctgccctgtgtttgaaaacttaa 16258561  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 327 - 380
Target Start/End: Original strand, 31088865 - 31088918
Alignment:
Q  327 aggatttcatgaaacttctttctgggtgtcccatattggagaatttgaaaacta 380  Q
    ||||||||||||||||| | ||||||||||||  ||||||| ||| ||||||||    
T  31088865 aggatttcatgaaacttatctctgggtgtcccgaattggaggattggaaaacta 31088918  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 327 - 364
Target Start/End: Complemental strand, 26053769 - 26053732
Alignment:
Q  327 aggatttcatgaaacttctttctgggtgtcccatattg 364  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  26053769 aggatttcatgaaacttctttttgggtgtcccaaattg 26053732  T

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