View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5110-Insertion-6 (Length: 696)
Name: NF5110-Insertion-6
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110-Insertion-6 |
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Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 253 - 695
Target Start/End: Complemental strand, 41796288 - 41795848
Alignment:
| Q |
253 |
acactttataaacatgtctataagaagttaagaaccacttgattatttnnnnnnntaatagtgtgtcataggctaatcgttgcaggtgcgttcaacttca |
352 |
Q |
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| T |
41796288 |
acactttataaacatgtctataagaagttaagaaccactcgattatttaaaaaaataatagtgtgtcataggctaatcgttgcaggtgcgttcaacttca |
41796189 |
T |
|
| Q |
353 |
agtggtttatgtaattatatatgttacatgctaacaatcagttgttatatgcagaaataacatagttttaacttttgagatatgctaattaattagctat |
452 |
Q |
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| T |
41796188 |
agtggtttatgtaattatatatgttacatgctaacaatcagttgttatatgcagaaataacatagttttaacttttgagatatgctaattaattagctat |
41796089 |
T |
|
| Q |
453 |
aactagttttatgaatcaagaagctttcctgagtttgaaatgactcctaacaattcctaagctataataccagttcctcgagccttttagataatgtgtt |
552 |
Q |
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| T |
41796088 |
aactagttttatgaatcaagaagctttcctgagtttgaaatgactcctaacaattcctaagctataataccagttcctcgagccttttagataatgtgtt |
41795989 |
T |
|
| Q |
553 |
tcggttctttatatcattatatgtatatatggtcatggactaatctcatattagtatattccatttattattaacttcttgtttaaggatattccnnnnn |
652 |
Q |
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| T |
41795988 |
tcggttctttatatcattat-tgtatatatggtcatggactaatctcatattagtatattccatttattattaacttcttgcttaaggatattccatttt |
41795890 |
T |
|
| Q |
653 |
nnnnctccatatacatggcatcttgttaatcayactattatca |
695 |
Q |
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| T |
41795889 |
tttt-tccatatacatggcatcttgttaatcatactattatca |
41795848 |
T |
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