View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5110-Insertion-7 (Length: 578)
Name: NF5110-Insertion-7
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110-Insertion-7 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 301 - 578
Target Start/End: Complemental strand, 27839855 - 27839572
Alignment:
| Q |
301 |
aagaaattaaaaggactttctgtatattatgcaagataaagttttgatatggtctacactaaaaaagaatatttgaagcaagcatggggtagcatcc--- |
397 |
Q |
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| T |
27839855 |
aagaaattaaaaggactttctgtatattatgcaagataaagttttgatatggtctacactaaaaaagaatatttgaagcaagcatggggtagcatccgca |
27839756 |
T |
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| Q |
398 |
---aatcccttttgggttttcact---ctgattttctttgttctacttgtggggttatttgagtggatcatatgaggatccaattgttggccgaattgcg |
491 |
Q |
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| T |
27839755 |
tccaatcccttttgggtcttcactagtctgatgttatttgttctacttgtggggttatttgagtggatcatatgaggatccaattgttggccgaattgcg |
27839656 |
T |
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| Q |
492 |
acccaatcttccattatttagtgtcccaacacctgctttcttgtaggtggattcatctgcctgatctacatgctctacgtatctttc |
578 |
Q |
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| T |
27839655 |
acccaatcttccattatttagtgtcccaacacctgctttcttgtaggtggattcatctgc---ttctacatgctctacgtatctttc |
27839572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 27840076 - 27839854
Alignment:
| Q |
8 |
gccaattggtcctatcatagtaaaaaattacagtcatattagtaaacaccttataatggtgtcatttagtttagaagtttcgccaatgtttttatgtatg |
107 |
Q |
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| T |
27840076 |
gccaattggtcccatcatagtaaaaaattacagtcatattagtaaacaccttataatggtgtcatttagtttagaagtttcgccaatgtttttatgtatg |
27839977 |
T |
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| Q |
108 |
aatctagaaattccgagatatgggactatattattattcaaaaaatacatcgacacataagtgataacataatgacatcatcctaaaaaataagtgtttg |
207 |
Q |
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| T |
27839976 |
aatctagaaattccgagatatggggctatattattatacaaaaaatacatcgacacataagtgataacataatgacatcatcataaaaaataagtgtttg |
27839877 |
T |
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| Q |
208 |
tgaatttttagtcatgtaaataa |
230 |
Q |
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| T |
27839876 |
tgaatttttagtcatgtaaataa |
27839854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 338 - 433
Target Start/End: Original strand, 51164084 - 51164182
Alignment:
| Q |
338 |
aaagttttgatatggtctacactaaaaaagaatatttgaagcaagcatggggtagcatccaatcccttttgggttttcac---tctgattttctttgtt |
433 |
Q |
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| T |
51164084 |
aaagttttgatatggtccacactaaaaaaaaacatttgaagcaagcttagggcagcatccaatcccttttaggtcttcactagtctgattttctttgtt |
51164182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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