View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5110_high_103 (Length: 224)
Name: NF5110_high_103
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110_high_103 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 9 - 208
Target Start/End: Original strand, 48487283 - 48487482
Alignment:
| Q |
9 |
tgtcgaagaaaatccatgataaggcaaaccaattacaagtttttgagaagaaaatcctctttttctccactctttaatacctgaatcagtattttcccaa |
108 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48487283 |
tgtccaagcaaatccatgataaggcaaaccaattacaagtttgtgagaagaaaatcctctttttctccactctttaatacctgaatcagtattttcccaa |
48487382 |
T |
|
| Q |
109 |
ccagatgaaccatacaaagccgcgtggaaacccgtaaaattgtcctttttaggaagatagtaatcatatgcaacaaaatgaacccaatccaaattcttct |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48487383 |
ccagatgaaccatacaaagccgcgtggaaacccgtaaaattgtcctttttaggaagatagtaatcatatgcaacaaaatgaacccaatccaaattcttct |
48487482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 48478823 - 48479013
Alignment:
| Q |
18 |
aaatccatgataaggcaaaccaattacaagtttttgagaagaaaatcctctttttctccactctttaatacctgaatcagtattttcccaaccagatgaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
48478823 |
aaatccatgataaggcaaaccaattacaagtttgttagaagaaaatcctctttttctccactctttgatacctgaatcagtattttcccagccagatgaa |
48478922 |
T |
|
| Q |
118 |
ccatacaaagccgcgtggaaacccgtaaaattgtcctttttaggaagatagtaatcatatgcaacaaaatgaacccaatccaaattcttct |
208 |
Q |
| |
|
||||| |||| || || |||| || | | ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
48478923 |
ccatataaaggtgcatgaaaacgtgtgacactgtcccttttaggaagatagtaattatatgcaacaaaatgaacccaatccaaattcttct |
48479013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 20 - 208
Target Start/End: Original strand, 48470463 - 48470651
Alignment:
| Q |
20 |
atccatgataaggcaaaccaattacaagtttttgagaagaaaatcctctttttctccactctttaatacctgaatcagtattttcccaaccagatgaacc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
48470463 |
atccatgataaggcaaaccaattacaagtttgttagaagaaaatcctctttttctccactctttaatgcctgaatcagtattttcccagtcagatgaacc |
48470562 |
T |
|
| Q |
120 |
atacaaagccgcgtggaaacccgtaaaattgtcctttttaggaagatagtaatcatatgcaacaaaatgaacccaatccaaattcttct |
208 |
Q |
| |
|
|| ||||| || || |||| || | | ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
48470563 |
gtataaagctgcatgaaaacgtgtgacactgtcccttttaggaagatagtaatcatatgcagcaaaatgaacccaatccaaattcttct |
48470651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 20 - 171
Target Start/End: Complemental strand, 48883458 - 48883307
Alignment:
| Q |
20 |
atccatgataaggcaaaccaattacaagtttttgagaagaaaatcctctttttctccactctttaatacctgaatcagtattttcccaaccagatgaacc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
48883458 |
atccatgataaggcaaaccaattacaagtttgttagaagaaaatcctctttttctccactctttgatacctgaatcagtattttcccagccagatgaacc |
48883359 |
T |
|
| Q |
120 |
atacaaagccgcgtggaaacccgtaaaattgtcctttttaggaagatagtaa |
171 |
Q |
| |
|
||| |||| || || |||| || | ||||||| ||||||||||||||||| |
|
|
| T |
48883358 |
atataaaggtgcatgaaaacgtgtgacattgtcccttttaggaagatagtaa |
48883307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University