View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5110_high_107 (Length: 220)

Name: NF5110_high_107
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5110_high_107
NF5110_high_107
[»] chr2 (2 HSPs)
chr2 (18-203)||(3279888-3280073)
chr2 (52-106)||(17993535-17993589)
[»] chr6 (34 HSPs)
chr6 (43-203)||(28098199-28098359)
chr6 (28-165)||(28150149-28150287)
chr6 (55-124)||(27337919-27337988)
chr6 (55-124)||(27398659-27398728)
chr6 (52-124)||(26937370-26937442)
chr6 (44-124)||(28781403-28781483)
chr6 (44-124)||(28786542-28786622)
chr6 (44-124)||(28792663-28792743)
chr6 (42-124)||(28297554-28297636)
chr6 (42-124)||(28514437-28514519)
chr6 (111-200)||(26341829-26341918)
chr6 (51-124)||(28234827-28234900)
chr6 (42-114)||(26975326-26975398)
chr6 (42-124)||(26635954-26636036)
chr6 (42-124)||(26741920-26742002)
chr6 (42-124)||(26861877-26861959)
chr6 (42-124)||(26959430-26959512)
chr6 (57-122)||(28325743-28325808)
chr6 (72-124)||(27214684-27214736)
chr6 (72-124)||(27234492-27234544)
chr6 (43-115)||(28227223-28227295)
chr6 (59-115)||(31284561-31284617)
chr6 (42-112)||(26646755-26646825)
chr6 (42-112)||(26752723-26752793)
chr6 (65-105)||(25538823-25538863)
chr6 (65-105)||(25580002-25580042)
chr6 (65-105)||(26056209-26056249)
chr6 (65-105)||(26076179-26076219)
chr6 (65-105)||(26143148-26143188)
chr6 (69-117)||(26623250-26623298)
chr6 (69-117)||(26729228-26729276)
chr6 (43-115)||(28181387-28181459)
chr6 (50-122)||(28185632-28185704)
chr6 (44-124)||(28243068-28243148)
[»] chr4 (6 HSPs)
chr4 (40-142)||(5090787-5090889)
chr4 (44-124)||(18723915-18723995)
chr4 (55-124)||(18731345-18731414)
chr4 (44-124)||(18655307-18655387)
chr4 (44-124)||(18679397-18679477)
chr4 (55-124)||(18699241-18699310)
[»] scaffold0277 (2 HSPs)
scaffold0277 (58-124)||(4528-4594)
scaffold0277 (58-112)||(13489-13543)
[»] scaffold0038 (4 HSPs)
scaffold0038 (51-124)||(34989-35062)
scaffold0038 (57-122)||(117058-117123)
scaffold0038 (43-115)||(27721-27793)
scaffold0038 (44-124)||(43230-43310)
[»] scaffold0419 (1 HSPs)
scaffold0419 (58-112)||(7801-7855)


Alignment Details
Target: chr2 (Bit Score: 174; Significance: 9e-94; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 3280073 - 3279888
Alignment:
Q  18 atgaatgcagaataggagtgatgtgggtacctaggattaaaatggtggccggacaagttagctgcttggttaagagccatcttccatttatgcaacctct 117  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3280073 atgaatgcagaatcggagtgatgtgggtacctaggattaaaatggtggccggacaagttagctgcttggttaagagccatcttccatttatgcaacctct 3279974  T
Q  118 tcatgttgtagttgtatttttctttgttattttggaacctcttttcatgcctagatatggctttgccataactcccagtctgatgt 203  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  3279973 tcatgttgtagttgtatttttctttgttattttggaacctcttctcatgcctagctatggctttgccataactcccagtctgatgt 3279888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 17993535 - 17993589
Alignment:
Q  52 gattaaaatggtggccggacaagttagctgcttggttaagagccatcttccattt 106  Q
    |||| ||||||||||| || |||||||| ||||||||||||||  ||||||||||    
T  17993535 gattgaaatggtggccagataagttagcagcttggttaagagctttcttccattt 17993589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 113; Significance: 2e-57; HSPs: 34)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 43 - 203
Target Start/End: Original strand, 28098199 - 28098359
Alignment:
Q  43 ggtacctaggattaaaatggtggccggacaagttagctgcttggttaagagccatcttccatttatgcaacctcttcatgttgtagttgtatttttcttt 142  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||    
T  28098199 ggtacctaggattgaaatggtggccggacaagttagctgcttggttaagagccatcttccatttatgcagcctcttcatgttgtcgttgtaattttcttt 28098298  T
Q  143 gttattttggaacctcttttcatgcctagatatggctttgccataactcccagtctgatgt 203  Q
    ||||||||||||||||| ||||||| ||| ||  ||||  ||||||||||| |||||||||    
T  28098299 gttattttggaacctctcttcatgcttagctaatgcttcaccataactccccgtctgatgt 28098359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 28 - 165
Target Start/End: Complemental strand, 28150287 - 28150149
Alignment:
Q  28 aataggagtgatgtggg-tacctaggattaaaatggtggccggacaagttagctgcttggttaagagccatcttccatttatgcaacctcttcatgttgt 126  Q
    |||| |||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||| |||| || ||||||||||||||    
T  28150287 aatatgagtgaagtgggatacctaggattgaaatggtggccggacaagttagctgcttggttgacagccatcttccaattattcagcctcttcatgttgt 28150188  T
Q  127 agttgtatttttctttgttattttggaacctcttttcat 165  Q
      ||||| ||||||||||||||||||||||||| |||||    
T  28150187 cattgtacttttctttgttattttggaacctctcttcat 28150149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 55 - 124
Target Start/End: Original strand, 27337919 - 27337988
Alignment:
Q  55 taaaatggtggccggacaagttagctgcttggttaagagccatcttccatttatgcaacctcttcatgtt 124  Q
    |||||||||||||||| |||||||| |||||| ||||||||||||||||||| | |||||||| ||||||    
T  27337919 taaaatggtggccggagaagttagcagcttgggtaagagccatcttccatttcttcaacctctccatgtt 27337988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 55 - 124
Target Start/End: Original strand, 27398659 - 27398728
Alignment:
Q  55 taaaatggtggccggacaagttagctgcttggttaagagccatcttccatttatgcaacctcttcatgtt 124  Q
    |||||||||||||||| |||||||| |||||| ||||||||||||||||||| | |||||||| ||||||    
T  27398659 taaaatggtggccggagaagttagcagcttgggtaagagccatcttccatttcttcaacctctccatgtt 27398728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 52 - 124
Target Start/End: Complemental strand, 26937442 - 26937370
Alignment:
Q  52 gattaaaatggtggccggacaagttagctgcttggttaagagccatcttccatttatgcaacctcttcatgtt 124  Q
    |||| ||||||||||| |||||||| || |||||||||||||| |||||||||||  ||||||||| ||||||    
T  26937442 gattgaaatggtggccagacaagtttgccgcttggttaagagctatcttccatttccgcaacctctccatgtt 26937370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 28781483 - 28781403
Alignment:
Q  44 gtacctaggattaaaatggtggccggacaagttagctgcttggttaagagccatcttccatttatgcaacctcttcatgtt 124  Q
    ||||| |||| || |||||| ||||||||||||||| |||||| | ||||||| |||||||| ||||||||||| ||||||    
T  28781483 gtacccaggactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgtt 28781403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 28786622 - 28786542
Alignment:
Q  44 gtacctaggattaaaatggtggccggacaagttagctgcttggttaagagccatcttccatttatgcaacctcttcatgtt 124  Q
    ||||| |||| || |||||| ||||||||||||||| |||||| | ||||||| |||||||| ||||||||||| ||||||    
T  28786622 gtacccaggactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgtt 28786542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 28792743 - 28792663
Alignment:
Q  44 gtacctaggattaaaatggtggccggacaagttagctgcttggttaagagccatcttccatttatgcaacctcttcatgtt 124  Q
    ||||| |||| || |||||| ||||||||||||||| |||||| | ||||||| |||||||| ||||||||||| ||||||    
T  28792743 gtacccaggactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgtt 28792663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 124
Target Start/End: Original strand, 28297554 - 28297636
Alignment:
Q  42 gggtacctaggattaaaatggtggccggacaagttagctgcttggttaagagccatcttccatttatgcaacctcttcatgtt 124  Q
    |||||||||||||| ||||||||||| || |||||||| | |||  |||||||  |||||||||| |||||||||| ||||||    
T  28297554 gggtacctaggattgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacctctccatgtt 28297636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 124
Target Start/End: Complemental strand, 28514519 - 28514437
Alignment:
Q  42 gggtacctaggattaaaatggtggccggacaagttagctgcttggttaagagccatcttccatttatgcaacctcttcatgtt 124  Q
    |||||||||||||| ||||||||||| || |||||||| | |||  |||||||  |||||||||| |||||||||| ||||||    
T  28514519 gggtacctaggattgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacctctccatgtt 28514437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 200
Target Start/End: Original strand, 26341829 - 26341918
Alignment:
Q  111 aacctcttcatgttgtagttgtatttttctttgttattttggaacctcttttcatgcctagatatggctttgccataactcccagtctga 200  Q
    ||||| |||||||||| || ||| |||||||||||||||||||||||  |||||||||||  ||| ||||  || ||||||||| |||||    
T  26341829 aaccttttcatgttgtcgtcgtacttttctttgttattttggaaccttctttcatgcctaactattgcttcaccgtaactcccaatctga 26341918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 124
Target Start/End: Complemental strand, 28234900 - 28234827
Alignment:
Q  51 ggattaaaatggtggccggacaagttagctgcttggttaagagccatcttccatttatgcaacctcttcatgtt 124  Q
    ||||| ||||||||||| || ||||||| || |||  ||||||||||||||||||| |||||||||| ||||||    
T  28234900 ggattgaaatggtggccagaaaagttagatgtttgagtaagagccatcttccatttctgcaacctctccatgtt 28234827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 114
Target Start/End: Complemental strand, 26975398 - 26975326
Alignment:
Q  42 gggtacctaggattaaaatggtggccggacaagttagctgcttggttaagagccatcttccatttatgcaacc 114  Q
    ||||||| | |||| ||||||||||| || |||||||| ||||||||||||||  ||||||||||| ||||||    
T  26975398 gggtacccaagattgaaatggtggccagataagttagcagcttggttaagagctttcttccatttaagcaacc 26975326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 124
Target Start/End: Complemental strand, 26636036 - 26635954
Alignment:
Q  42 gggtacctaggattaaaatggtggccggacaagttagctgcttggttaagagccatcttccatttatgcaacctcttcatgtt 124  Q
    ||||||| | |||| ||||||||||| || |||||||| ||||||||||||||  ||||||||||  |||||| || ||||||    
T  26636036 gggtacccaagattgaaatggtggccagataagttagcagcttggttaagagctttcttccatttcagcaaccactccatgtt 26635954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 124
Target Start/End: Complemental strand, 26742002 - 26741920
Alignment:
Q  42 gggtacctaggattaaaatggtggccggacaagttagctgcttggttaagagccatcttccatttatgcaacctcttcatgtt 124  Q
    ||||||| | |||| ||||||||||| || |||||||| ||||||||||||||  ||||||||||  |||||| || ||||||    
T  26742002 gggtacccaagattgaaatggtggccagataagttagcagcttggttaagagctttcttccatttcagcaaccactccatgtt 26741920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 124
Target Start/End: Complemental strand, 26861959 - 26861877
Alignment:
Q  42 gggtacctaggattaaaatggtggccggacaagttagctgcttggttaagagccatcttccatttatgcaacctcttcatgtt 124  Q
    ||||||| |||| ||||||||| ||| ||||||||||| |||||||| ||||| |  |||||| | |||||||||| ||||||    
T  26861959 gggtacccaggactaaaatggtagcctgacaagttagcagcttggttcagagcaactttccatctctgcaacctctccatgtt 26861877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 124
Target Start/End: Complemental strand, 26959512 - 26959430
Alignment:
Q  42 gggtacctaggattaaaatggtggccggacaagttagctgcttggttaagagccatcttccatttatgcaacctcttcatgtt 124  Q
    ||||||| | |||| ||||||||||| || |||||||| ||||||||||||||  ||||||||||  |||||| || ||||||    
T  26959512 gggtacccaagattgaaatggtggccagataagttagcagcttggttaagagctttcttccatttcagcaaccgctccatgtt 26959430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 122
Target Start/End: Complemental strand, 28325808 - 28325743
Alignment:
Q  57 aaatggtggccggacaagttagctgcttggttaagagccatcttccatttatgcaacctcttcatg 122  Q
    ||||||||||| || |||||||| | |||  ||||||||||||||||||| |||||||||| ||||    
T  28325808 aaatggtggcctgagaagttagcagtttgagtaagagccatcttccatttctgcaacctctccatg 28325743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 124
Target Start/End: Complemental strand, 27214736 - 27214684
Alignment:
Q  72 aagttagctgcttggttaagagccatcttccatttatgcaacctcttcatgtt 124  Q
    |||||||| |||||||||||||| ||||||||||| ||||||| || ||||||    
T  27214736 aagttagcagcttggttaagagctatcttccatttctgcaaccgctccatgtt 27214684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 27234492 - 27234544
Alignment:
Q  72 aagttagctgcttggttaagagccatcttccatttatgcaacctcttcatgtt 124  Q
    |||||||| |||||||||||||| ||||||||||| ||||||| || ||||||    
T  27234492 aagttagcagcttggttaagagctatcttccatttctgcaaccgctccatgtt 27234544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 115
Target Start/End: Complemental strand, 28227295 - 28227223
Alignment:
Q  43 ggtacctaggattaaaatggtggccggacaagttagctgcttggttaagagccatcttccatttatgcaacct 115  Q
    ||||||||||||| |  |||||||| || |||||||| | |||  ||||||||||||||||||| ||||||||    
T  28227295 ggtacctaggattgatttggtggccagagaagttagcagtttgagtaagagccatcttccatttctgcaacct 28227223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 31284617 - 31284561
Alignment:
Q  59 atggtggccggacaagttagctgcttggttaagagccatcttccatttatgcaacct 115  Q
    ||||| ||| |||||||||||||||||  ||||||| ||||||||||| ||||||||    
T  31284617 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacct 31284561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 112
Target Start/End: Complemental strand, 26646825 - 26646755
Alignment:
Q  42 gggtacctaggattaaaatggtggccggacaagttagctgcttggttaagagccatcttccatttatgcaa 112  Q
    ||||||| |||| || ||||||  |||||||||||||| |||||| | ||||||| |||||||| ||||||    
T  26646825 gggtacccaggactataatggtatccggacaagttagcagcttgggtcagagccaacttccattgatgcaa 26646755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 112
Target Start/End: Complemental strand, 26752793 - 26752723
Alignment:
Q  42 gggtacctaggattaaaatggtggccggacaagttagctgcttggttaagagccatcttccatttatgcaa 112  Q
    ||||||| |||| || ||||||  |||||||||||||| |||||| | ||||||| |||||||| ||||||    
T  26752793 gggtacccaggactataatggtatccggacaagttagcagcttgggtcagagccaacttccattgatgcaa 26752723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 25538863 - 25538823
Alignment:
Q  65 gccggacaagttagctgcttggttaagagccatcttccatt 105  Q
    ||||||||||||||| |||||| ||||||| ||||||||||    
T  25538863 gccggacaagttagcagcttggataagagctatcttccatt 25538823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 25580042 - 25580002
Alignment:
Q  65 gccggacaagttagctgcttggttaagagccatcttccatt 105  Q
    ||||||||||||||| |||||| ||||||| ||||||||||    
T  25580042 gccggacaagttagcagcttgggtaagagctatcttccatt 25580002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 26056249 - 26056209
Alignment:
Q  65 gccggacaagttagctgcttggttaagagccatcttccatt 105  Q
    ||||||||||||||| |||||  ||||||||||||||||||    
T  26056249 gccggacaagttagcagcttgagtaagagccatcttccatt 26056209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 26076219 - 26076179
Alignment:
Q  65 gccggacaagttagctgcttggttaagagccatcttccatt 105  Q
    ||||||||||||||| |||||  ||||||||||||||||||    
T  26076219 gccggacaagttagcagcttgagtaagagccatcttccatt 26076179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 26143188 - 26143148
Alignment:
Q  65 gccggacaagttagctgcttggttaagagccatcttccatt 105  Q
    ||||||||||||||| |||||| ||||||| ||||||||||    
T  26143188 gccggacaagttagcagcttggataagagctatcttccatt 26143148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 117
Target Start/End: Complemental strand, 26623298 - 26623250
Alignment:
Q  69 gacaagttagctgcttggttaagagccatcttccatttatgcaacctct 117  Q
    |||||||||||||||||   |||||| ||||||||||| ||||||||||    
T  26623298 gacaagttagctgcttgtgcaagagctatcttccatttttgcaacctct 26623250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 117
Target Start/End: Complemental strand, 26729276 - 26729228
Alignment:
Q  69 gacaagttagctgcttggttaagagccatcttccatttatgcaacctct 117  Q
    |||||||||||||||||   |||||| ||||||||||| ||||||||||    
T  26729276 gacaagttagctgcttgtgcaagagctatcttccatttttgcaacctct 26729228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 115
Target Start/End: Complemental strand, 28181459 - 28181387
Alignment:
Q  43 ggtacctaggattaaaatggtggccggacaagttagctgcttggttaagagccatcttccatttatgcaacct 115  Q
    ||||||||||||| |  |||||||| || |||||||| | |||  ||||||| ||||||||||| ||||||||    
T  28181459 ggtacctaggattgatttggtggccagagaagttagcagtttgagtaagagcaatcttccatttctgcaacct 28181387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 122
Target Start/End: Complemental strand, 28185704 - 28185632
Alignment:
Q  50 aggattaaaatggtggccggacaagttagctgcttggttaagagccatcttccatttatgcaacctcttcatg 122  Q
    |||||| ||||||||||| || |||||||| | |||  |||||||  |||||||||| |||||||||| ||||    
T  28185704 aggattgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacctctccatg 28185632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 28243148 - 28243068
Alignment:
Q  44 gtacctaggattaaaatggtggccggacaagttagctgcttggttaagagccatcttccatttatgcaacctcttcatgtt 124  Q
    |||||||| | | ||||||||||| || |||||||||| |||  | |||||  |||||||||| |||||||||| ||||||    
T  28243148 gtacctagaactgaaatggtggccagagaagttagctgtttgagttagagcactcttccatttctgcaacctctccatgtt 28243068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 142
Target Start/End: Original strand, 5090787 - 5090889
Alignment:
Q  40 gtgggtacctaggattaaaatggtggccggacaagttagctgcttggttaagagccatcttccatttatgcaacctcttcatgttgtagttgtatttttc 139  Q
    |||| ||||||| ||| ||||||| ||| ||||| ||||||||||| ||||||||||||| |||||| |||||| ||| ||| || |  |||||||||||    
T  5090787 gtggctacctagcattgaaatggtagccagacaaattagctgcttgcttaagagccatctcccatttctgcaacttctccatattatctttgtatttttc 5090886  T
Q  140 ttt 142  Q
    |||    
T  5090887 ttt 5090889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 18723915 - 18723995
Alignment:
Q  44 gtacctaggattaaaatggtggccggacaagttagctgcttggttaagagccatcttccatttatgcaacctcttcatgtt 124  Q
    ||||| |||| ||||||||| ||||||||||||||| |||| | | ||||||| |||||||| |||||||| || ||||||    
T  18723915 gtacccaggactaaaatggtagccggacaagttagcagcttcggtcagagccaacttccattgatgcaaccgctccatgtt 18723995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 124
Target Start/End: Original strand, 18731345 - 18731414
Alignment:
Q  55 taaaatggtggccggacaagttagctgcttggttaagagccatcttccatttatgcaacctcttcatgtt 124  Q
    ||||||||| ||||||||||||||| |||| | | ||||||| |||||||| |||||||| || ||||||    
T  18731345 taaaatggtagccggacaagttagcagcttcggtcagagccaacttccattgatgcaaccgctccatgtt 18731414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 18655307 - 18655387
Alignment:
Q  44 gtacctaggattaaaatggtggccggacaagttagctgcttggttaagagccatcttccatttatgcaacctcttcatgtt 124  Q
    ||||| |||| || |||||| ||||||||||||||| |||| | | ||||||| |||||||| |||||||| || ||||||    
T  18655307 gtacccaggactagaatggtagccggacaagttagcagcttcggtcagagccaacttccattgatgcaaccgctccatgtt 18655387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 18679397 - 18679477
Alignment:
Q  44 gtacctaggattaaaatggtggccggacaagttagctgcttggttaagagccatcttccatttatgcaacctcttcatgtt 124  Q
    ||||| |||| ||||||||| ||||||||||||||| |||| | | ||||| | |||||||| |||||||| || ||||||    
T  18679397 gtacccaggactaaaatggtagccggacaagttagcagcttcggtcagagctaacttccattgatgcaaccgctccatgtt 18679477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 124
Target Start/End: Original strand, 18699241 - 18699310
Alignment:
Q  55 taaaatggtggccggacaagttagctgcttggttaagagccatcttccatttatgcaacctcttcatgtt 124  Q
    ||||||||| ||||||||||||||| |||| | | ||||| | |||||||| |||||||| || ||||||    
T  18699241 taaaatggtagccggacaagttagcagcttcggtcagagctaacttccattgatgcaaccgctccatgtt 18699310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 58 - 124
Target Start/End: Original strand, 4528 - 4594
Alignment:
Q  58 aatggtggccggacaagttagctgcttggttaagagccatcttccatttatgcaacctcttcatgtt 124  Q
    |||||| ||||||||||||||| |||||| | ||||||| |||||||| ||||||||||| ||||||    
T  4528 aatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgtt 4594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 112
Target Start/End: Original strand, 13489 - 13543
Alignment:
Q  58 aatggtggccggacaagttagctgcttggttaagagccatcttccatttatgcaa 112  Q
    |||||| ||||||||||||||| |||||| | ||||||| |||||||| ||||||    
T  13489 aatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaa 13543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 124
Target Start/End: Complemental strand, 35062 - 34989
Alignment:
Q  51 ggattaaaatggtggccggacaagttagctgcttggttaagagccatcttccatttatgcaacctcttcatgtt 124  Q
    ||||| ||||||||||| || ||||||| || |||  ||||||||||||||||||| |||||||||| ||||||    
T  35062 ggattgaaatggtggccagaaaagttagatgtttgagtaagagccatcttccatttctgcaacctctccatgtt 34989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 122
Target Start/End: Complemental strand, 117123 - 117058
Alignment:
Q  57 aaatggtggccggacaagttagctgcttggttaagagccatcttccatttatgcaacctcttcatg 122  Q
    ||||||||||| || |||||||| | |||  ||||||||||||||||||| |||||||||| ||||    
T  117123 aaatggtggcctgagaagttagcagtttgagtaagagccatcttccatttctgcaacctctccatg 117058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 115
Target Start/End: Complemental strand, 27793 - 27721
Alignment:
Q  43 ggtacctaggattaaaatggtggccggacaagttagctgcttggttaagagccatcttccatttatgcaacct 115  Q
    ||||||||||||| |  |||||||| || |||||||| | |||  ||||||| ||||||||||| ||||||||    
T  27793 ggtacctaggattgatttggtggccagagaagttagcagtttgagtaagagcaatcttccatttctgcaacct 27721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 43310 - 43230
Alignment:
Q  44 gtacctaggattaaaatggtggccggacaagttagctgcttggttaagagccatcttccatttatgcaacctcttcatgtt 124  Q
    |||||||| | | ||||||||||| || |||||||||| |||  | |||||  |||||||||| |||||||||| ||||||    
T  43310 gtacctagaactgaaatggtggccagagaagttagctgtttgagttagagcactcttccatttctgcaacctctccatgtt 43230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 112
Target Start/End: Complemental strand, 7855 - 7801
Alignment:
Q  58 aatggtggccggacaagttagctgcttggttaagagccatcttccatttatgcaa 112  Q
    |||||| ||||||||||||||| |||||| | ||||||| |||||||| ||||||    
T  7855 aatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaa 7801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University