View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5110_high_110 (Length: 215)
Name: NF5110_high_110
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110_high_110 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 5 - 198
Target Start/End: Original strand, 5949146 - 5949339
Alignment:
| Q |
5 |
gagacccaatgaatcagtggacgcgatttttaatatatcgagactcgttcaaattgcaacaaaagtacaaaaatacagtgaaatgtgtgttagagagtgt |
104 |
Q |
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| T |
5949146 |
gagacccaatgaatcagtggacgcgatttttaatatatcgagactcgttcaaattgcaacaaaagtacaaaaatacagtgaaatgtgtgttagagagtgt |
5949245 |
T |
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| Q |
105 |
ttttcaaaatttctattatttataattaaatttttctctttgttggtctatgcagcatgttaaattaaagtatataattcatgttggtgattag |
198 |
Q |
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| T |
5949246 |
ttttcaaaatttctattatttataattaaatttttgtctttgttggtctatgcagcatgttaaattaaagtatataattcatgttggtgattag |
5949339 |
T |
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