View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5110_high_12 (Length: 470)

Name: NF5110_high_12
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5110_high_12
NF5110_high_12
[»] chr6 (2 HSPs)
chr6 (5-376)||(9365284-9365655)
chr6 (13-79)||(33424184-33424250)
[»] chr8 (2 HSPs)
chr8 (15-79)||(16578989-16579052)
chr8 (15-79)||(16583729-16583792)
[»] chr3 (1 HSPs)
chr3 (14-62)||(34338083-34338131)
[»] chr2 (1 HSPs)
chr2 (13-76)||(42633140-42633203)
[»] scaffold0499 (1 HSPs)
scaffold0499 (13-79)||(7059-7125)
[»] chr4 (2 HSPs)
chr4 (13-79)||(24225893-24225959)
chr4 (13-62)||(16871509-16871558)
[»] chr7 (2 HSPs)
chr7 (13-62)||(46963268-46963317)
chr7 (15-75)||(17921405-17921465)
[»] chr5 (1 HSPs)
chr5 (13-62)||(24137455-24137504)


Alignment Details
Target: chr6 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 5 - 376
Target Start/End: Original strand, 9365284 - 9365655
Alignment:
Q  5 taaataatactacccctcaagttaaagcttactaaactttaaacttactacaaattaaacttgaaaataaaccaacctaatttataccataactaactaa 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||| |||    
T  9365284 taaataatactacccctcaagttaaagcttactaaactttaaacttattacaaattaaccctgaaaataaaccaacctaatttataccataactaattaa 9365383  T
Q  105 gagaagcgactaaagtgactaaccatcatagagaagagcatcaaccaaagaaaagaaccatcaatcaaagtgagtaaccatcattgataggagcatcaat 204  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |    
T  9365384 gagaagcgactaaagtgactaaccatcatagagacgagcatcaaccaaagaaaagaaccatcaatcaaagtgggtaaccatcatagataggagcatcagt 9365483  T
Q  205 caaagcaaataaccatcagagtgagaagcagctaaggagtgaaccaactaagtaaagatccaaaccaaaaaactccaattcaaaccaaatagaagaaaat 304  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9365484 aaaagcaaataaccatcagagtgagaagcagctaaggagtgaaccaactaagtaaagatccaaaccaaaaaactccaattcaaaccaaatagaagaaaat 9365583  T
Q  305 gtagggagacgcaaccaaaaatgaagaacaaatagagagaaagaaacaaccaaacataagaaatcgattggg 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9365584 gtagggagacgcaaccaaaaatgaagaacaaatagagagaaagaaacaaccaaacataagaaatcgattggg 9365655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 33424184 - 33424250
Alignment:
Q  13 actacccctcaagttaaagcttactaaactttaaacttactacaaattaaacttgaaaataaaccaa 79  Q
    ||||||||||||||| ||||||||||| ||||||  ||  |||||||||| |  |||||||||||||    
T  33424184 actacccctcaagttgaagcttactaagctttaagtttgttacaaattaatccagaaaataaaccaa 33424250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 16578989 - 16579052
Alignment:
Q  15 tacccctcaagttaaagcttactaaactttaaacttactacaaattaaacttgaaaataaaccaa 79  Q
    ||||||||||||||||||||| ||| ||||||||||  |||||||| ||| | ||||||||||||    
T  16578989 tacccctcaagttaaagcttaataagctttaaacttgttacaaatt-aacctaaaaataaaccaa 16579052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 16583729 - 16583792
Alignment:
Q  15 tacccctcaagttaaagcttactaaactttaaacttactacaaattaaacttgaaaataaaccaa 79  Q
    ||||||||||| ||||||||||||| ||||||| ||  |||||||||| ||| ||||||||||||    
T  16583729 tacccctcaagctaaagcttactaagctttaaatttgatacaaattaacctt-aaaataaaccaa 16583792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 34338131 - 34338083
Alignment:
Q  14 ctacccctcaagttaaagcttactaaactttaaacttactacaaattaa 62  Q
    |||||||||||| ||||||||||||| ||||||||||  ||||||||||    
T  34338131 ctacccctcaagctaaagcttactaagctttaaacttgttacaaattaa 34338083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 42633140 - 42633203
Alignment:
Q  13 actacccctcaagttaaagcttactaaactttaaacttactacaaattaaacttgaaaataaac 76  Q
    ||||| |||||||||||||||||||||||||| |  ||| || ||||||| | |||||||||||    
T  42633140 actacacctcaagttaaagcttactaaacttttagtttattataaattaaccctgaaaataaac 42633203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 7059 - 7125
Alignment:
Q  13 actacccctcaagttaaagcttactaaactttaaacttactacaaattaaacttgaaaataaaccaa 79  Q
    ||||||||| ||| |||||||||||||  ||||| ||   |||||||||| ||||||||||||||||    
T  7059 actaccccttaagctaaagcttactaaggtttaagctcgttacaaattaaccttgaaaataaaccaa 7125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 24225959 - 24225893
Alignment:
Q  13 actacccctcaagttaaagcttactaaactttaaacttactacaaattaaacttgaaaataaaccaa 79  Q
    ||||||||| |||||||||||||||||  || || || | |||||||||| || |||||||||||||    
T  24225959 actacccctgaagttaaagcttactaagtttgaagctcattacaaattaacctcgaaaataaaccaa 24225893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 16871558 - 16871509
Alignment:
Q  13 actacccctcaagttaaagcttactaaactttaaacttactacaaattaa 62  Q
    ||||||||||||| | ||||||||||| ||||||||||  ||||||||||    
T  16871558 actacccctcaagctgaagcttactaagctttaaacttgttacaaattaa 16871509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 46963268 - 46963317
Alignment:
Q  13 actacccctcaagttaaagcttactaaactttaaacttactacaaattaa 62  Q
    ||||||||||||| | ||||||||||| ||||||||||  ||||||||||    
T  46963268 actacccctcaagctgaagcttactaagctttaaacttgttacaaattaa 46963317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 17921405 - 17921465
Alignment:
Q  15 tacccctcaagttaaagcttactaaactttaaacttactacaaattaaacttgaaaataaa 75  Q
    ||||||||||| ||||||||||||| |||||| |||  |||||||||| |  |||||||||    
T  17921405 tacccctcaagctaaagcttactaagctttaagcttgttacaaattaacccagaaaataaa 17921465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 24137504 - 24137455
Alignment:
Q  13 actacccctcaagttaaagcttactaaactttaaacttactacaaattaa 62  Q
    ||||||||||||| ||||||||||||| |||||| |||  ||||||||||    
T  24137504 actacccctcaagctaaagcttactaagctttaagcttgttacaaattaa 24137455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University