View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5110_high_14 (Length: 463)

Name: NF5110_high_14
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5110_high_14
NF5110_high_14
[»] chr2 (8 HSPs)
chr2 (20-278)||(14538293-14538569)
chr2 (280-390)||(10148572-10148682)
chr2 (280-391)||(10147786-10147897)
chr2 (273-379)||(16871513-16871618)
chr2 (279-390)||(39062858-39062969)
chr2 (280-390)||(34229033-34229143)
chr2 (43-117)||(14553955-14554029)
chr2 (222-278)||(14553813-14553869)
[»] chr5 (6 HSPs)
chr5 (280-463)||(43379370-43379553)
chr5 (280-390)||(43378572-43378682)
chr5 (280-463)||(11343679-11343858)
chr5 (279-390)||(11336275-11336386)
chr5 (280-379)||(3636365-3636464)
chr5 (273-379)||(33529729-33529834)
[»] chr6 (3 HSPs)
chr6 (350-463)||(13208147-13208260)
chr6 (280-390)||(13207346-13207456)
chr6 (334-391)||(10838146-10838204)
[»] chr7 (11 HSPs)
chr7 (280-390)||(42252829-42252942)
chr7 (280-390)||(42253035-42253144)
chr7 (280-379)||(48204046-48204145)
chr7 (280-380)||(46294641-46294741)
chr7 (279-390)||(35752325-35752435)
chr7 (278-390)||(35753023-35753139)
chr7 (280-390)||(18947286-18947396)
chr7 (280-390)||(18948212-18948322)
chr7 (286-360)||(46295636-46295710)
chr7 (329-390)||(43492978-43493039)
chr7 (280-316)||(25675779-25675815)
[»] chr8 (11 HSPs)
chr8 (280-400)||(42578709-42578829)
chr8 (285-390)||(42503031-42503136)
chr8 (278-390)||(42503880-42503992)
chr8 (280-390)||(41889323-41889434)
chr8 (278-379)||(39308666-39308767)
chr8 (286-379)||(39309638-39309731)
chr8 (280-360)||(6462604-6462684)
chr8 (285-380)||(28584353-28584448)
chr8 (329-382)||(3572124-3572177)
chr8 (339-391)||(38443754-38443806)
chr8 (274-342)||(43235425-43235493)
[»] chr4 (5 HSPs)
chr4 (279-401)||(39310395-39310518)
chr4 (285-401)||(24484788-24484905)
chr4 (280-380)||(9483632-9483732)
chr4 (334-391)||(32158853-32158911)
chr4 (280-390)||(39311330-39311440)
[»] scaffold0151 (1 HSPs)
scaffold0151 (332-390)||(20792-20850)
[»] chr3 (5 HSPs)
chr3 (329-390)||(17057152-17057213)
chr3 (278-378)||(34936713-34936813)
chr3 (280-379)||(34329358-34329457)
chr3 (280-369)||(55444560-55444649)
chr3 (280-320)||(40613828-40613868)
[»] chr1 (1 HSPs)
chr1 (280-390)||(15668237-15668348)


Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 20 - 278
Target Start/End: Complemental strand, 14538569 - 14538293
Alignment:
Q  20 tattacttctgatatcattaatcaactaataatggttgggggacgaaagtagatgacggaaatgctatttctgcacaaaatcaatcaaacagccaccttg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14538569 tattacttctgatatcattaatcaactaataatggttgggggacgaaagtatatgacggaaatgctatttctgcacaaaatcaatcaaacagccaccttg 14538470  T
Q  120 gtctgtattcctctcctacataaaggc------------------tagactgactgacacaacagctgtgctcgccataaagggagaagatcccattttt 201  Q
    |||||||||||||||||||||||||||                  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14538469 gtctgtattcctctcctacataaaggcagacagtcagattttctctagactgactgacacaacagctgtgctcgccataaagggagaagatcccattttt 14538370  T
Q  202 gcaaatatctaaagagtagttaaacattctccaaaatataaaatgaaagaactcggcaattcatgtctggtcaaaat 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  14538369 gcaaatatctaaagagtagttaaacattctccaaaatataaaatgaaagaactcggcgattcatgtctggtcaaaat 14538293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 280 - 390
Target Start/End: Complemental strand, 10148682 - 10148572
Alignment:
Q  280 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaa 379  Q
    ||||||| |||  ||||||||| |||| ||||||||| |||||| ||   ||| |||||||||||||| | |||||||||| |||||| | |||||||||    
T  10148682 gagttcaacttcactccatttaggaagcctccatttaccccatttcattccttggatgtgtgacatgtggtaaaaataaaatcaagggttgagattaaaa 10148583  T
Q  380 ggtttggaaaa 390  Q
     ||||||||||    
T  10148582 agtttggaaaa 10148572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 391
Target Start/End: Original strand, 10147786 - 10147897
Alignment:
Q  280 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaa 379  Q
    ||||||| |||  ||||| ||| |||| |||||||||||||||| ||    || |||||||||||||| |||||||||||| |||| | | |||||||||    
T  10147786 gagttcaacttcactccagttaggaagcctccatttatcccatttcattcgttggatgtgtgacatgtggcaaaaataaaatcaagcgttgagattaaaa 10147885  T
Q  380 ggtttggaaaat 391  Q
     |||||||||||    
T  10147886 agtttggaaaat 10147897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 273 - 379
Target Start/End: Complemental strand, 16871618 - 16871513
Alignment:
Q  273 caaaatcgagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaag 372  Q
    ||||| ||||||||||||||||||||||| ||||  || |||||||||||| || ||| ||||||  |||||||| || ||| |||||  ||||||| ||    
T  16871618 caaaaacgagttcatctttgctccatttaggaagcttcaatttatcccatttcaactcatagatgactgacatgtggc-aaactaaaacgaagggctgag 16871520  T
Q  373 attaaaa 379  Q
    |||||||    
T  16871519 attaaaa 16871513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 279 - 390
Target Start/End: Complemental strand, 39062969 - 39062858
Alignment:
Q  279 cgagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaa 378  Q
    ||||| |||||||| ||||||||||   | || ||||| || ||| ||  || ||||||| |||||||| |||| ||||||| ||| ||||| |||||||    
T  39062969 cgagtccatctttgttccatttatgtttgttcaatttacccaatttcaagtcatagatgtatgacatgtggcaacaataaaatcaatggctaggattaaa 39062870  T
Q  379 aggtttggaaaa 390  Q
    ||||||||||||    
T  39062869 aggtttggaaaa 39062858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 390
Target Start/End: Complemental strand, 34229143 - 34229033
Alignment:
Q  280 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaa 379  Q
    |||| ||||||||||||||||| ||   ||| ||||| ||||||  |  || |||||||||||||||| | |||||||||| ||| |||| |||||||||    
T  34229143 gagtccatctttgctccatttaagattcctcaatttaccccattttaagtcatagatgtgtgacatgtggaaaaaataaaaccaatggctgagattaaaa 34229044  T
Q  380 ggtttggaaaa 390  Q
    | |||| ||||    
T  34229043 gctttgaaaaa 34229033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 117
Target Start/End: Complemental strand, 14554029 - 14553955
Alignment:
Q  43 aactaataatggttgggggacgaaagtagatgacggaaatgctatttctgcacaaaatcaatcaaacagccacct 117  Q
    ||||||||| |||| ||| | || ||||||||| |  ||| |||||| |||||||||||||||||||| ||||||    
T  14554029 aactaataagggttcgggaatgatagtagatgatgccaatactatttatgcacaaaatcaatcaaacaaccacct 14553955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 278
Target Start/End: Complemental strand, 14553869 - 14553813
Alignment:
Q  222 taaacattctccaaaatataaaatgaaagaactcggcaattcatgtctggtcaaaat 278  Q
    |||||||||||||||||| ||||||||||||| |||  |  |||| |||||||||||    
T  14553869 taaacattctccaaaataaaaaatgaaagaacacggtgaaccatgactggtcaaaat 14553813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 164; Significance: 2e-87; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 280 - 463
Target Start/End: Complemental strand, 43379553 - 43379370
Alignment:
Q  280 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaa 379  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |  ||||||||    
T  43379553 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtggcaaaaataaaagcaagggttgggattaaaa 43379454  T
Q  380 ggtttggaaaatcaattgtttagtaaataaaaagaagccacacgcacactcttctggttcaaagttcacacgacccttcttctt 463  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  43379453 ggtttggaaaatcaattgtttagtaaataaaaagaagccacgcgcacactcttctggttcaaagttcacacgacccttcttctt 43379370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 280 - 390
Target Start/End: Original strand, 43378572 - 43378682
Alignment:
Q  280 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaa 379  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| || ||||||||||||||||||| | |||||||||    
T  43378572 gagttcatctttgctccatttatgaaggctccatttaccccattctagctcttagatgtgtgacacgtggcaaaaataaaagcaagggttgagattaaaa 43378671  T
Q  380 ggtttggaaaa 390  Q
    |||||| ||||    
T  43378672 ggtttgaaaaa 43378682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 280 - 463
Target Start/End: Complemental strand, 11343858 - 11343679
Alignment:
Q  280 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaa 379  Q
    |||||||||||  |||||||||||||  ||||||||| ||||      |||||| ||| ||||||||| |||||||||||||||||   |  |||||| |    
T  11343858 gagttcatcttccctccatttatgaaacctccatttaccccaa-----ctcttatatgggtgacatgtggcaaaaataaaagcaagaattgggattaata 11343764  T
Q  380 ggtttgg-aaaatcaattgtttagtaaataaaaagaagccacacgcac--actcttctggttcaaagttcacacgacccttcttctt 463  Q
    ||||||| |||| |||||||||| |||  |||||||||||||||||||  |||||||| ||||||| ||||||||||| ||||||||    
T  11343763 ggtttggaaaaagcaattgtttaataa--aaaaagaagccacacgcacttactcttctagttcaaacttcacacgacctttcttctt 11343679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 279 - 390
Target Start/End: Original strand, 11336275 - 11336386
Alignment:
Q  279 cgagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaa 378  Q
    |||||||||||||  |||||||| |||| ||||||||  |||  ||||||| |||| ||||||||||||  |||| ||||||||||||| || |||||||    
T  11336275 cgagttcatctttcttccatttaggaagcctccattttccccggtccagcttttaggtgtgtgacatgtgacaaacataaaagcaagggttaggattaaa 11336374  T
Q  379 aggtttggaaaa 390  Q
    ||||||||||||    
T  11336375 aggtttggaaaa 11336386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 379
Target Start/End: Complemental strand, 3636464 - 3636365
Alignment:
Q  280 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaa 379  Q
    |||||||||||||||||||||| ||||||||||||| |||| || || ||| ||||||  |||||||| | |||| |||||  ||||| | |||||||||    
T  3636464 gagttcatctttgctccatttaagaaggctccatttttcccttttcaactcatagatgactgacatgtggaaaaattaaaattaagggttgagattaaaa 3636365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 273 - 379
Target Start/End: Original strand, 33529729 - 33529834
Alignment:
Q  273 caaaatcgagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaag 372  Q
    ||||| ||||||||||||||||||||||| ||||  || |||||||||||| || ||| ||||||  |||||||| || ||| |||||  ||||||| ||    
T  33529729 caaaaacgagttcatctttgctccatttaggaagcttcaatttatcccatttcaactcatagatgactgacatgtggc-aaactaaaacgaagggctgag 33529827  T
Q  373 attaaaa 379  Q
    |||||||    
T  33529828 attaaaa 33529834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 350 - 463
Target Start/End: Complemental strand, 13208260 - 13208147
Alignment:
Q  350 caaaaataaaagcaagggctaagattaaaaggtttggaaaatcaattgtttagtaaataaaaagaagccacacgcacactcttctggttcaaagttcaca 449  Q
    |||||||||||||||||| |  |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13208260 caaaaataaaagcaagggttgggattaaaaggtttggaaaattaattgtttagtaaataaaaagaagccacgcgcacactcttctggttcaaagttcaca 13208161  T
Q  450 cgacccttcttctt 463  Q
    ||||||||||||||    
T  13208160 cgacccttcttctt 13208147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 280 - 390
Target Start/End: Original strand, 13207346 - 13207456
Alignment:
Q  280 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaa 379  Q
    |||||||||||| ||||||||| ||||||| |||||| ||||||||||||||||||||||||||| || ||||||||||||||||||| | |||||||||    
T  13207346 gagttcatctttactccatttacgaaggctacatttaccccattccagctcttagatgtgtgacacgtggcaaaaataaaagcaagggttgagattaaaa 13207445  T
Q  380 ggtttggaaaa 390  Q
    | |||| ||||    
T  13207446 gatttgaaaaa 13207456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 391
Target Start/End: Original strand, 10838146 - 10838204
Alignment:
Q  334 gatgtgtgacatgtagcaa-aaataaaagcaagggctaagattaaaaggtttggaaaat 391  Q
    |||||||||||||| |||| |||||||| |||||||||||||||||| |||| ||||||    
T  10838146 gatgtgtgacatgtggcaacaaataaaaccaagggctaagattaaaaagtttagaaaat 10838204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 280 - 390
Target Start/End: Original strand, 42252829 - 42252942
Alignment:
Q  280 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacat---gtagcaaaaataaaagcaagggctaagatta 376  Q
    ||||||||||||||||||||||||||| ||||||||| | |||||||||| ||||||| |||||||   || |||||||||||||||| |||| ||||||    
T  42252829 gagttcatctttgctccatttatgaagcctccatttaccacattccagcttttagatgcgtgacatatggtggcaaaaataaaagcaaaggctgagatta 42252928  T
Q  377 aaaggtttggaaaa 390  Q
    ||||||||||||||    
T  42252929 aaaggtttggaaaa 42252942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 280 - 390
Target Start/End: Complemental strand, 42253144 - 42253035
Alignment:
Q  280 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaa 379  Q
    |||||||| |||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||| |  ||||||||||| |||||||| |||||||||    
T  42253144 gagttcatgtttgctccatttatgaagcctcaatttatcccattccaactcttagatgtgtgacat-tgtcaaaaataaaaacaagggctgagattaaaa 42253046  T
Q  380 ggtttggaaaa 390  Q
    | |||| ||||    
T  42253045 gatttgaaaaa 42253035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 280 - 379
Target Start/End: Complemental strand, 48204145 - 48204046
Alignment:
Q  280 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaa 379  Q
    |||||||||||||||| ||||| ||||||||||||| |||| || || ||| |||||   |||||||| |||||| |||||  ||||| | |||||||||    
T  48204145 gagttcatctttgctcaatttaagaaggctccatttttcccttttcacctcatagataactgacatgtggcaaaattaaaattaagggttgagattaaaa 48204046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 380
Target Start/End: Original strand, 46294641 - 46294741
Alignment:
Q  280 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaa 379  Q
    |||| ||||||||||||||||   ||||||||||||||||| ||  |  || |||||||||||||| |  ||| ||||||| |||||| || ||||||||    
T  46294641 gagtgcatctttgctccatttgcaaaggctccatttatccctttttacttcatagatgtgtgacatatgacaataataaaatcaagggttaggattaaaa 46294740  T
Q  380 g 380  Q
    |    
T  46294741 g 46294741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 390
Target Start/End: Original strand, 35752325 - 35752435
Alignment:
Q  279 cgagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaa 378  Q
    ||||||||| ||||||||||||  |   |||| |||||||||||| ||  || ||||||| |||||||| |||||||||||| ||| || |  |||||||    
T  35752325 cgagttcatgtttgctccattttggtttgctcaatttatcccatttcaa-tcatagatgtatgacatgtggcaaaaataaaatcaatggttgtgattaaa 35752423  T
Q  379 aggtttggaaaa 390  Q
    ||||||| ||||    
T  35752424 aggtttgaaaaa 35752435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 390
Target Start/End: Complemental strand, 35753139 - 35753023
Alignment:
Q  278 tcgagttcatctttgctccatttatgaaggctccatttat----cccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaaga 373  Q
    |||||| |||||||||||||||||||    ||| ||||||    |||||| ||  || ||||||| |||||||| |||||||||||| ||| ||||  ||    
T  35753139 tcgagtccatctttgctccatttatgtttactcaatttatttaccccatttcacgtcatagatgtatgacatgtggcaaaaataaaatcaatggctgtga 35753040  T
Q  374 ttaaaaggtttggaaaa 390  Q
    ||||||| |||||||||    
T  35753039 ttaaaagatttggaaaa 35753023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 390
Target Start/End: Original strand, 18947286 - 18947396
Alignment:
Q  280 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaa 379  Q
    |||| ||||||||||||||||| | || |||||||||| ||||| ||  || |||||||  ||||||| ||||| |||||| ||| || | |||||| ||    
T  18947286 gagtgcatctttgctccatttagggagcctccatttataccatttcacttcatagatgttggacatgtggcaaatataaaaccaatggttgagattagaa 18947385  T
Q  380 ggtttggaaaa 390  Q
    || || |||||    
T  18947386 ggcttagaaaa 18947396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 390
Target Start/End: Complemental strand, 18948322 - 18948212
Alignment:
Q  280 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaa 379  Q
    |||| ||||||||||||||||| | || || ||||||| ||||| ||  || | ||||| |||||||| ||||| ||||||  || |||| |||||||||    
T  18948322 gagtgcatctttgctccatttagggagccttcatttataccatttcacttcatggatgtttgacatgtggcaaatataaaattaatggctgagattaaaa 18948223  T
Q  380 ggtttggaaaa 390  Q
    || || |||||    
T  18948222 ggcttagaaaa 18948212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 360
Target Start/End: Complemental strand, 46295710 - 46295636
Alignment:
Q  286 atctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaa 360  Q
    ||||||||||||||||| || |||||||||||||| || ||  |  |||||||||||||||| || |||| ||||    
T  46295710 atctttgctccatttatcaatgctccatttatcccttttcattttatagatgtgtgacatgtggctaaaacaaaa 46295636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 390
Target Start/End: Complemental strand, 43493039 - 43492978
Alignment:
Q  329 tcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaaggtttggaaaa 390  Q
    ||||||||||||||||  | |||||||| ||| ||| || | ||||||||||||||||||||    
T  43493039 tcttagatgtgtgacacatggcaaaaatgaaaccaacggttgagattaaaaggtttggaaaa 43492978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 316
Target Start/End: Complemental strand, 25675815 - 25675779
Alignment:
Q  280 gagttcatctttgctccatttatgaaggctccattta 316  Q
    ||||||||||||||||||||||||  |||||||||||    
T  25675815 gagttcatctttgctccatttatgttggctccattta 25675779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 280 - 400
Target Start/End: Original strand, 42578709 - 42578829
Alignment:
Q  280 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaa 379  Q
    |||| |||||||||||||||||||   |||| ||||| |||||| ||  || ||||||| |||||||| |||||||||||| ||| |||| |||||||||    
T  42578709 gagtccatctttgctccatttatgtttgctcaatttaccccatttcaagtcatagatgtatgacatgtggcaaaaataaaatcaatggctgagattaaaa 42578808  T
Q  380 ggtttggaaaatcaattgttt 400  Q
    | ||||||||| || ||||||    
T  42578809 gatttggaaaagcacttgttt 42578829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 285 - 390
Target Start/End: Original strand, 42503031 - 42503136
Alignment:
Q  285 catctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaaggttt 384  Q
    ||||||||||||||||| |    ||| ||||| |||||| ||  || |||||||||||||||||| |||||||||| ||| ||||  |||||||||||||    
T  42503031 catctttgctccatttaagtttcctcaatttaccccatttcatatcatagatgtgtgacatgtagaaaaaataaaatcaatggctgtgattaaaaggttt 42503130  T
Q  385 ggaaaa 390  Q
    ||||||    
T  42503131 ggaaaa 42503136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 278 - 390
Target Start/End: Complemental strand, 42503992 - 42503880
Alignment:
Q  278 tcgagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaa 377  Q
    |||||| ||||||||||||||||| |    ||| ||||| |||||||||  || |||||||||||||||| | ||||||||||  || ||||  ||||||    
T  42503992 tcgagtccatctttgctccatttaggcttcctcaatttaccccattccatatcatagatgtgtgacatgtggaaaaaataaaattaatggctgtgattaa 42503893  T
Q  378 aaggtttggaaaa 390  Q
    |||||||||||||    
T  42503892 aaggtttggaaaa 42503880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 390
Target Start/End: Original strand, 41889323 - 41889434
Alignment:
Q  280 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaat-aaaagcaagggctaagattaaa 378  Q
    |||| |||||||| |||||||| ||||||||||||||  || || ||    || |||||||||||||| |||||||| |||| |||||||| ||||||||    
T  41889323 gagtccatctttgttccatttaagaaggctccatttactccttttcactgtttggatgtgtgacatgtggcaaaaatgaaaatcaagggctgagattaaa 41889422  T
Q  379 aggtttggaaaa 390  Q
    ||| ||||||||    
T  41889423 agggttggaaaa 41889434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 278 - 379
Target Start/End: Original strand, 39308666 - 39308767
Alignment:
Q  278 tcgagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaa 377  Q
    |||||| ||||||||||||||||| |||  ||||||||||||| || || ||| ||||||  |||||||| |||||| |||||  |||||||  ||||||    
T  39308666 tcgagtccatctttgctccatttaggaaacctccatttatcccttttcacctcatagatgactgacatgtggcaaaactaaaatgaagggctgggattaa 39308765  T
Q  378 aa 379  Q
    ||    
T  39308766 aa 39308767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 286 - 379
Target Start/End: Complemental strand, 39309731 - 39309638
Alignment:
Q  286 atctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaa 379  Q
    |||||||||||||||| |||  ||||||||||||| || || ||| ||||||  |||||||| ||||||  ||||  ||||||| |||||||||    
T  39309731 atctttgctccatttaggaaacctccatttatcccttttcacctcatagatgattgacatgtggcaaaacaaaaatgaagggctgagattaaaa 39309638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 360
Target Start/End: Complemental strand, 6462684 - 6462604
Alignment:
Q  280 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaa 360  Q
    |||| |||||||||||||||||||   |||| ||||| |||||| ||  || ||||||| |||||||| ||||||||||||    
T  6462684 gagtccatctttgctccatttatgtttgctcaatttaccccatttcaagtcctagatgtatgacatgtggcaaaaataaaa 6462604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 380
Target Start/End: Complemental strand, 28584448 - 28584353
Alignment:
Q  285 catctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaag 380  Q
    ||||||||||||||||| ||   |||||||||||||  |    ||||||||| ||||||| || |||||||||||| |||||||  ||||||||||    
T  28584448 catctttgctccatttaagagacctccatttatccctgtttgcctcttagatatgtgacacgtggcaaaaataaaaccaagggccgagattaaaag 28584353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 382
Target Start/End: Complemental strand, 3572177 - 3572124
Alignment:
Q  329 tcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaaggt 382  Q
    ||||||||||||||||||| ||||||||||||  |||  ||| |||||||||||    
T  3572177 tcttagatgtgtgacatgtggcaaaaataaaacaaagtactaggattaaaaggt 3572124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 391
Target Start/End: Original strand, 38443754 - 38443806
Alignment:
Q  339 gtgacatgtagcaaaaataaaagcaagggctaagattaaaaggtttggaaaat 391  Q
    ||||||||||| |||||||||| ||| | ||  ||||||||||||||||||||    
T  38443754 gtgacatgtagaaaaaataaaatcaatgactgtgattaaaaggtttggaaaat 38443806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 342
Target Start/End: Original strand, 43235425 - 43235493
Alignment:
Q  274 aaaatcgagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtga 342  Q
    ||||| |||| |||||||||||||||||  ||| ||||||||||||| || ||  || |||||||||||    
T  43235425 aaaatggagtgcatctttgctccatttaccaagcctccatttatcccttttcacttcatagatgtgtga 43235493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 279 - 401
Target Start/End: Original strand, 39310395 - 39310518
Alignment:
Q  279 cgagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaa 378  Q
    ||||| ||||||||||||||||| ||   ||| |||||||||||| ||  |  ||||||| |||||||| | |||||||||| ||| |||| ||||||||    
T  39310395 cgagtccatctttgctccatttaagattcctcaatttatcccatttcaagttatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaa 39310494  T
Q  379 aggtttggaaaat-caattgttta 401  Q
    || |||| ||||| ||||||||||    
T  39310495 agctttgaaaaatgcaattgttta 39310518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 285 - 401
Target Start/End: Original strand, 24484788 - 24484905
Alignment:
Q  285 catctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaaggttt 384  Q
    ||||||||||||||||| ||   ||| |||||||| ||| ||  |  |||||||||||||||| | |||||||||| ||| |||| |||||||||| |||    
T  24484788 catctttgctccatttaagattcctcaatttatcctatttcaagttatagatgtgtgacatgtggaaaaaataaaaccaatggctgagattaaaagcttt 24484887  T
Q  385 ggaaaat-caattgttta 401  Q
    | ||||| ||||||||||    
T  24484888 gaaaaatgcaattgttta 24484905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 380
Target Start/End: Complemental strand, 9483732 - 9483632
Alignment:
Q  280 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaa 379  Q
    |||| ||||||||||||||||   |||| |||||||||||| || ||  || |||||||||||||||| || | |||||||  ||||| || ||||||||    
T  9483732 gagtgcatctttgctccatttgcaaaggttccatttatcccttttcacttcatagatgtgtgacatgtggccataataaaattaagggttaggattaaaa 9483633  T
Q  380 g 380  Q
    |    
T  9483632 g 9483632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 391
Target Start/End: Original strand, 32158853 - 32158911
Alignment:
Q  334 gatgtgtgacatgtagcaaaa-ataaaagcaagggctaagattaaaaggtttggaaaat 391  Q
    |||||||||||||||||||||  ||||| |||||||  |||||||||||||| ||||||    
T  32158853 gatgtgtgacatgtagcaaaagttaaaaccaagggcagagattaaaaggtttagaaaat 32158911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 390
Target Start/End: Complemental strand, 39311440 - 39311330
Alignment:
Q  280 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaa 379  Q
    |||| ||||||||||||||||| ||   ||| ||||| ||||||  |  || |||||||||||||||| | |||||||||| |||  ||| |||||||||    
T  39311440 gagtccatctttgctccatttaagatttctcaatttaccccattttaagtcatagatgtgtgacatgtggaaaaaataaaatcaattgctgagattaaaa 39311341  T
Q  380 ggtttggaaaa 390  Q
    | |||| ||||    
T  39311340 gctttgaaaaa 39311330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 332 - 390
Target Start/End: Original strand, 20792 - 20850
Alignment:
Q  332 tagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaaggtttggaaaa 390  Q
    |||||||||||||||| | |||||||||| ||| |||| ||||||||||||||||||||    
T  20792 tagatgtgtgacatgtggtaaaaataaaaccaatggctgagattaaaaggtttggaaaa 20850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 329 - 390
Target Start/End: Original strand, 17057152 - 17057213
Alignment:
Q  329 tcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaaggtttggaaaa 390  Q
    |||||||||||||||| || |||||||| ||| ||| || | ||||||||||||||||||||    
T  17057152 tcttagatgtgtgacacgtggcaaaaatgaaaccaacggttgagattaaaaggtttggaaaa 17057213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 378
Target Start/End: Original strand, 34936713 - 34936813
Alignment:
Q  278 tcgagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaa 377  Q
    |||||| |||||||||||||||||  |   ||||||||||||| || ||  || ||||| |||||||||| |||||||||||| ||| ||||  ||||||    
T  34936713 tcgagtgcatctttgctccatttaccatacctccatttatcccttttcacttcatagatttgtgacatgtggcaaaaataaaaccaatggcttggattaa 34936812  T
Q  378 a 378  Q
    |    
T  34936813 a 34936813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 379
Target Start/End: Original strand, 34329358 - 34329457
Alignment:
Q  280 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggctaagattaaaa 379  Q
    |||||||||||||||||||||| |   |||| |||||||||||||||   | ||||||| || ||||| ||||||| |||  |||||| | |||||||||    
T  34329358 gagttcatctttgctccatttaggcgtgctcaatttatcccattccaagacatagatgtatgtcatgtggcaaaaacaaattcaagggttgagattaaaa 34329457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 369
Target Start/End: Complemental strand, 55444649 - 55444560
Alignment:
Q  280 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaataaaagcaagggct 369  Q
    |||| |||||||||| |||||| ||| |||||||||||||| || ||  |  | |||||||||||||| |||||  ||||| ||||||||    
T  55444649 gagtccatctttgcttcatttaagaatgctccatttatcccttttcactttattgatgtgtgacatgtggcaaatgtaaaaacaagggct 55444560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 320
Target Start/End: Complemental strand, 40613868 - 40613828
Alignment:
Q  280 gagttcatctttgctccatttatgaaggctccatttatccc 320  Q
    ||||||||||||||||||||||  ||| |||||||||||||    
T  40613868 gagttcatctttgctccatttagcaagcctccatttatccc 40613828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 390
Target Start/End: Complemental strand, 15668348 - 15668237
Alignment:
Q  280 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtagcaaaaat-aaaagcaagggctaagattaaa 378  Q
    |||| ||||||||||||||||| ||||||||||||||  || || ||    || |||||||||||||| |||||||| |||| |||| | |  |||||||    
T  15668348 gagtccatctttgctccatttaagaaggctccatttactccttttcactgtttggatgtgtgacatgtggcaaaaatgaaaatcaagtgatgggattaaa 15668249  T
Q  379 aggtttggaaaa 390  Q
    ||| ||||||||    
T  15668248 agggttggaaaa 15668237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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