View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5110_high_16 (Length: 461)
Name: NF5110_high_16
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 6 - 446
Target Start/End: Original strand, 2751410 - 2751850
Alignment:
| Q |
6 |
tatattgcaagttttttggccttacaactagccaacttatgagtacagctaagccaacaatgattattaaagctaaaattattatggcaatgtaacgtag |
105 |
Q |
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| T |
2751410 |
tatattgcaagttttttggccttacaactagccaacttatgagtacagctaagccaacaatgattattaaagctaaaattattatggcaatgtaacgtag |
2751509 |
T |
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| Q |
106 |
cagcattgaactttttggtttggttgcttgaggatttgattgtgtgagaggttgagccattttttgaaaggctaattcagtttagggttgtgtagtttta |
205 |
Q |
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| T |
2751510 |
cagcattgaactttttggtttggttgcttgaggatttgattgtgtgagaggttgagccattttttgaaaggctaattcagtttagggttgtgtagtttta |
2751609 |
T |
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| Q |
206 |
atttgattgaagaaccaaatcaaatgatgtttatatattgctatgtattaaccatcaattcaagataatattctttgaaatattttttaataaatattca |
305 |
Q |
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| T |
2751610 |
atttgattgaagaaccaaatcaaatgatgtttatatattgctatgtatgaaccatcaattcaagataatattctttgaaatattttttaataaatattca |
2751709 |
T |
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| Q |
306 |
cttttttgctgtcagaatttcgtgcatgaaactcaagagatctatgagattctatatatatgctaaaacattgttctttacttgagattctatatgctaa |
405 |
Q |
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| T |
2751710 |
cttttttgctgtcagaatttcgtgcatgaaactcaagagatctatgagattctatatatatgctaaaacattgttctttacttgagattctatatgctaa |
2751809 |
T |
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| Q |
406 |
gtaattgttctttacttgagattcaagtgtcacaatatatt |
446 |
Q |
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| T |
2751810 |
gtaattgttctttacttgagattcaagtgtcacaatatatt |
2751850 |
T |
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