View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5110_high_17 (Length: 460)
Name: NF5110_high_17
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 16 - 454
Target Start/End: Complemental strand, 32486528 - 32486093
Alignment:
| Q |
16 |
catgtcacctttgttgccatattatatatgaaaacgtacgtaccaataacttacatacaagttggaacctaataatttttccnnnnnnngaaggtacgat |
115 |
Q |
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| T |
32486528 |
catgtcacctttgttgtcatattatatatgaaaacgtacgtaccaataacttacatacaagttggaacctaataatttttccaaaaaaagaaggtacgat |
32486429 |
T |
|
| Q |
116 |
ctgtaatacaatctgtcataatttattattttggcttgtattcgtaacagagattttgtttgttgagaatattgtttgtccaaaagacaacctttgtcaa |
215 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32486428 |
ctgtaatacaatctgtcataatttatt---ttggcttgtattcgtaacagagattttgtttgttgagaatattgtttgtccaaaagacaacctttgtcaa |
32486332 |
T |
|
| Q |
216 |
aatcaaattttattttggcaatatcctaactgagagataaaaaatattggaaaatctataatggcaaagggtaacgagaaaaacggagaaaacaaaggtt |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32486331 |
aatcaaattttattttggcaatatcctaactgagagataaaaaatattggaaaatctataatgacaaagggtaacgagaaaaacggagaaaacaaaggtt |
32486232 |
T |
|
| Q |
316 |
agagaagtaaagcaacaaatgattgggtgtcgttagagtacagtgtgatgggaacgaaaaaatgacagcaaaagccttatttgcatgttttgttattttc |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32486231 |
agagaagtaaagcaacaaatgattgggtgtcgttagagtacagtgtgatgggaacgaaaaaatgacagcaaaagccttatttgcatgttttgttattttc |
32486132 |
T |
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| Q |
416 |
acctttcttcttctttagagccttccttcttcatctcac |
454 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |
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| T |
32486131 |
acctttcttcttctttagagccttccttcttcatgtcac |
32486093 |
T |
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