View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5110_high_19 (Length: 452)
Name: NF5110_high_19
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110_high_19 |
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| [»] scaffold0110 (4 HSPs) |
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Alignment Details
Target: scaffold0110 (Bit Score: 393; Significance: 0; HSPs: 4)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Complemental strand, 12085 - 11649
Alignment:
| Q |
1 |
ttttgatgaaaacatcccaaatactagggccacgaccctctttgctagccataccctcaacttgataagcagaagttgcaactccaaacacaaaaccttt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| || || |
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| T |
12085 |
ttttgatgaaaacatcccaaatactagggccacgaccctctttgctagctataccctctacttgataagcagaagttgcaactccaaacacaaacccctt |
11986 |
T |
|
| Q |
101 |
aggaaaaacatctctactcaaccctccagtatcaaaatgcactgtttcaggcaccgtaaccccattaactgagctaacaagaacaattaagaagaagaaa |
200 |
Q |
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| T |
11985 |
aggaaaaacatctctactcaaccctccagtatccaaatgcactgtttcaggcactgtaacccccttaactgagctaacaagaacaattaagaagaagaaa |
11886 |
T |
|
| Q |
201 |
aacatggaataaaaacattgatgctgttgtgaatccaacatcaccatcttcaacaatagtgaagtgaaacactgacactatttgtatgtgtaactgttat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
11885 |
aacatggaataaaaacattgatgctgttgtgaatccaacatcaccatcttcaacaatagtgaagtgaaacactgacactatttgtatgtgtaagtgttat |
11786 |
T |
|
| Q |
301 |
gggagataatttttcattgattatcacatgtgtgagtttggttttataggacatgtttgaagaagaattctattttgcccatcaaaaaactaaaattaga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11785 |
gggagataatttttcattgattatcacatgtgtgagtttggttttataggacatgtttgaagaagaattctattttgcccatcaaaaaactaaaattaga |
11686 |
T |
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| Q |
401 |
aataaattgt-aaatgtccatttggcaatgtatctta |
436 |
Q |
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| T |
11685 |
aataaattttaaaatgtccatttggcaatgtatctta |
11649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #2
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Complemental strand, 19822 - 19386
Alignment:
| Q |
1 |
ttttgatgaaaacatcccaaatactagggccacgaccctctttgctagccataccctcaacttgataagcagaagttgcaactccaaacacaaaaccttt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| || || |
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| T |
19822 |
ttttgatgaaaacatcccaaatactagggccacgaccctctttgctagctataccctctacttgataagcagaagttgcaactccaaacacaaacccctt |
19723 |
T |
|
| Q |
101 |
aggaaaaacatctctactcaaccctccagtatcaaaatgcactgtttcaggcaccgtaaccccattaactgagctaacaagaacaattaagaagaagaaa |
200 |
Q |
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| T |
19722 |
aggaaaaacatctctactcaaccctccagtatccaaatgcactgtttcaggcactgtaacccccttaactgagctaacaagaacaattaagaagaagaaa |
19623 |
T |
|
| Q |
201 |
aacatggaataaaaacattgatgctgttgtgaatccaacatcaccatcttcaacaatagtgaagtgaaacactgacactatttgtatgtgtaactgttat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
19622 |
aacatggaataaaaacattgatgctgttgtgaatccaacatcaccatcttcaacaatagtgaagtgaaacactgacactatttgtatgtgtaagtgttat |
19523 |
T |
|
| Q |
301 |
gggagataatttttcattgattatcacatgtgtgagtttggttttataggacatgtttgaagaagaattctattttgcccatcaaaaaactaaaattaga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19522 |
gggagataatttttcattgattatcacatgtgtgagtttggttttataggacatgtttgaagaagaattctattttgcccatcaaaaaactaaaattaga |
19423 |
T |
|
| Q |
401 |
aataaattgt-aaatgtccatttggcaatgtatctta |
436 |
Q |
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| T |
19422 |
aataaattttaaaatgtccatttggcaatgtatctta |
19386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #3
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 27521 - 27269
Alignment:
| Q |
1 |
ttttgatgaaaacatcccaaatactagggccacgaccctctttgctagccataccctcaacttgataagcagaagttgcaactccaaacacaaaaccttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || || |
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| T |
27521 |
ttttgatgaaaacatcccaaatactagggccacgaccctctttgctagccataccctctacttgataagcagaagttgcaactccaaacacaaacccctt |
27422 |
T |
|
| Q |
101 |
aggaaaaacatctctactcaaccctccagtatcaaaatgcactgtttcaggcaccgtaaccccattaactgagctaacaagaacaattaagaagaagaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||| ||||||||||||| ||||||||||||| |
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| T |
27421 |
aggaaaaacatctctactcaaccctccagtatccaaatgcactgtttcaggcactgtaactccattaactgaactaacaagaacaactaagaagaagaaa |
27322 |
T |
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| Q |
201 |
aacatggaataaaaacattgatgctgttgtgaatccaacatcaccatcttcaa |
253 |
Q |
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| T |
27321 |
aacatggaatagaaacattgatgctgttgtgaatccaacatcatcatcttcaa |
27269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 304 - 430
Target Start/End: Complemental strand, 27233 - 27108
Alignment:
| Q |
304 |
agataatttttcattgattatcacatgtgtgagtttggttttataggacatgtttgaagaagaattctattttgcccatcaaaaaactaaaattagaaat |
403 |
Q |
| |
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||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||| |||| |||||||||||||| |
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| T |
27233 |
agataatgtttcattgattaccacatgagtgagtttggttttataggacatgtttgaagaaaatttctattttgcccatc-aaaagctaaaattagaaat |
27135 |
T |
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| Q |
404 |
aaattgtaaatgtccatttggcaatgt |
430 |
Q |
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| T |
27134 |
aaattgtaaatgtacatttggcaatgt |
27108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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