View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5110_high_20 (Length: 450)
Name: NF5110_high_20
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110_high_20 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 3 - 442
Target Start/End: Original strand, 29930292 - 29930731
Alignment:
| Q |
3 |
ttaagtgtttgtttaggatttaagatgatgattatgttgcagttgccaatgacgatctctcctgatatgacatacttgaccacattgaaagcatacttta |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29930292 |
ttaagtgtttgtttaggatttaagatgatgattatgttgtagttgccaaggacgatctctcctgatatgacatacttgaccacattgaaagcatacttta |
29930391 |
T |
|
| Q |
103 |
ctttgaaaagaaataattccagagtcgaatcaaccactgcagaataaaaattactctaagagcctaatctgaagtgtcaagctcgaaaccttcggtaaag |
202 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
29930392 |
ctttgaaaagaaatatttccagagtcgaatcaaccactgcagactaaaaattactctaagagcctaatctgaagtgtcaagctcgaaaccttccgtaaag |
29930491 |
T |
|
| Q |
203 |
ttgcataattagatccaaccacaaatccaacaagtatttccttgatcttttggtgaaacacatctcttctgtatgatagggtctcctttgcagtcgccca |
302 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29930492 |
ttgcataaatagatccaaccacaaatccaacaagtatttccttgatcttttggtgaaacacatctcttctgtatgatagggtctcctttgcagtcgccca |
29930591 |
T |
|
| Q |
303 |
caatttatatgctcctctcaagatttcataaattaccaatactttgaacataaaaaatctctttcaaaaatataacacatgcaccttttcactatttgaa |
402 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29930592 |
caatttataagctcctcccaagatttcataaattaccaatactttgaacataaaaaatctctttcaaaaatataacacatgcaccttttcactatttgaa |
29930691 |
T |
|
| Q |
403 |
caaaagtaagtgtacttggatataataccataagaataat |
442 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29930692 |
caaaagtaagtgtacttggatataataccataagaataat |
29930731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 76 - 162
Target Start/End: Complemental strand, 30608164 - 30608074
Alignment:
| Q |
76 |
acttgaccacattgaaagcatactttac----tttgaaaagaaataattccagagtcgaatcaaccactgcagaataaaaattactctaag |
162 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||| ||||| |||||||||| ||||||||||| ||||| |||||||||||||| |
|
|
| T |
30608164 |
acttgaccacattgaaagcatactttaccatctatgaaacaaaatatttccagagtctaatcaaccactttagaatcaaaattactctaag |
30608074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University