View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5110_high_26 (Length: 406)
Name: NF5110_high_26
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110_high_26 |
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Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Original strand, 41658215 - 41658601
Alignment:
| Q |
1 |
gtagaaggacagtgattgatgttatatcagaatgaggacttactcctgatactagttcaggttcaggacaagctgggtagtaaacaaagcctaatgacat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
41658215 |
gtagaaggacagtgattgatgttatatcagaatgaggacttactcctgatactagttcaggtgcaggacaagctgggtagtaaacaaagcctaatgacat |
41658314 |
T |
|
| Q |
101 |
cgtatccattaaggcgtgttctcnnnnnnngcctaactccttcacattcagtttcttaagaagcacttttagcaattttctaataaaagcttcagcatat |
200 |
Q |
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| T |
41658315 |
cgtatccattaaggcgtgttctctttctctgcctaactccttcacattcaatttcttaagaagcacttttagcaattttctaataaaagcttcagcatat |
41658414 |
T |
|
| Q |
201 |
ttcatatattctagtgcttgatccctgcaaaaatgatagtcaatgaagactgatatcaatatttgttgaatttacaacttaaatagttaaatttcatgat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41658415 |
ttcatatattctagtgcttgatccctgcaaaaatgatagtcaatcaagactgatatcaatatttgttgaatttacaacttaaatagttaaatttcatgat |
41658514 |
T |
|
| Q |
301 |
atacacaaagcaaatcatggataagtatatttcttacttgcatataggaggccaatatgcatgaattttctcctctgaagtatacac |
387 |
Q |
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| T |
41658515 |
atacacaaagcaaatcatggataagtatatttcttacttgcatacaggaggccaatatgcatgaattttctcctctgaagtatacac |
41658601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 156; Significance: 9e-83; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 14628518 - 14628782
Alignment:
| Q |
1 |
gtagaaggacagtgattgatgttatatcagaatgaggacttactcctgatactagttcaggttcaggacaagctgggtagtaaacaaagcctaatgacat |
100 |
Q |
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||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||| ||||||||| ||| |
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| T |
14628518 |
gtagaaggacagtgattgatgatatatcagaatgaggacctactcctgatacaagttcaggttcaggacaagcagggtagtaattgaagcctaatatcat |
14628617 |
T |
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| Q |
101 |
cgtatccattaaggcgtgttctcnnnnnnngcctaactccttcacattcagtttcttaagaagcacttttagcaattttctaataaaagcttcagcatat |
200 |
Q |
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| | ||||||| |||| ||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
14628618 |
tgcacccattaacgcgtattctctttctttgtctaactccttcacattcagtttcttaagaagcacttttagcaactttctaataaaagcgtcagcatat |
14628717 |
T |
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| Q |
201 |
ttcatatattctagtgcttgatccctgc-aaaaatgatagtcaatgaagactgatatcaatattt |
264 |
Q |
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| T |
14628718 |
ttcatatattctagtgcttgattcctgcaaaaaaagatagtcaatcaagactgatatcaatattt |
14628782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 14644323 - 14644587
Alignment:
| Q |
1 |
gtagaaggacagtgattgatgttatatcagaatgaggacttactcctgatactagttcaggttcaggacaagctgggtagtaaacaaagcctaatgacat |
100 |
Q |
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||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||| ||||||||| ||| |
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| T |
14644323 |
gtagaaggacagtgattgatgatatatcagaatgaggacctactcctgatacaagttcaggttcaggacaagcagggtagtaattgaagcctaatatcat |
14644422 |
T |
|
| Q |
101 |
cgtatccattaaggcgtgttctcnnnnnnngcctaactccttcacattcagtttcttaagaagcacttttagcaattttctaataaaagcttcagcatat |
200 |
Q |
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| | ||||||| |||||||||| | ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
14644423 |
tgcacccattaaagcgtgttctctttctttgtctaactcgttcacattcagtttcttaagaagcacttgtagcaattttctaataaaagcgtcagcatat |
14644522 |
T |
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| Q |
201 |
ttcatatattctagtgcttgatccctgc-aaaaatgatagtcaatgaagactgatatcaatattt |
264 |
Q |
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|||||||||||||||||||||| ||||| ||||| |||||||||| ||||||||||||||||||| |
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| T |
14644523 |
ttcatatattctagtgcttgattcctgcaaaaaaagatagtcaatcaagactgatatcaatattt |
14644587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 333 - 387
Target Start/End: Original strand, 14644941 - 14644995
Alignment:
| Q |
333 |
cttacttgcatataggaggccaatatgcatgaattttctcctctgaagtatacac |
387 |
Q |
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|||||||||||| || |||||||||||||||||||||||| |||||||||||||| |
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| T |
14644941 |
cttacttgcatacagcaggccaatatgcatgaattttctcttctgaagtatacac |
14644995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 328 - 387
Target Start/End: Original strand, 14629868 - 14629927
Alignment:
| Q |
328 |
tatttcttacttgcatataggaggccaatatgcatgaattttctcctctgaagtatacac |
387 |
Q |
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|||| |||||||||||| | |||||||||||||||||||||||| |||||||||||||| |
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| T |
14629868 |
tattacttacttgcatacaacaggccaatatgcatgaattttctcttctgaagtatacac |
14629927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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