View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5110_high_27 (Length: 397)

Name: NF5110_high_27
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5110_high_27
NF5110_high_27
[»] chr6 (9 HSPs)
chr6 (24-385)||(11665595-11665956)
chr6 (20-385)||(11707574-11707939)
chr6 (201-376)||(11629476-11629651)
chr6 (201-376)||(11620761-11620936)
chr6 (249-377)||(11671435-11671563)
chr6 (255-377)||(12090709-12090831)
chr6 (265-377)||(11758595-11758707)
chr6 (255-376)||(11737186-11737307)
chr6 (21-53)||(11621083-11621115)
[»] chr8 (1 HSPs)
chr8 (131-385)||(16390874-16391128)
[»] scaffold0196 (1 HSPs)
scaffold0196 (204-376)||(15272-15444)
[»] scaffold0019 (1 HSPs)
scaffold0019 (204-373)||(5985-6154)
[»] chr1 (1 HSPs)
chr1 (255-377)||(44814043-44814165)


Alignment Details
Target: chr6 (Bit Score: 317; Significance: 1e-179; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 24 - 385
Target Start/End: Complemental strand, 11665956 - 11665595
Alignment:
Q  24 agccatgccaataaatcctggaatgaaggaaattgaaatttagttatttgcataacgagagttgaagatattttttgaggatagnnnnnnntaattagaa 123  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||    
T  11665956 agccatgccgatatatcctggaatgaaggaaattgaaatttagttatttgcataacgagagttgaagatattttttgaggatagaaaaaaataattagaa 11665857  T
Q  124 tataattataatacagaaacaatgacatttcggatattcaaataagcaaattctcaccggaactgaaagtccccgacggaagcataaccatgcaaagcgc 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  11665856 tataattataatacagaaacaatgacatttcggatattcaaataagcaaattctcaccggaactgaaagtccccgatggaagcataaccatgcaaagcgc 11665757  T
Q  224 tgtagtggcaagaagacttgcacctattgtctctaaccgtaggatcaaccactcatttgaggcaaaattatgaaaaaatgcactagcattaatgtctatt 323  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11665756 tgtagtggcaagaagacttgcacctattgtttctaaccgtaggatcaaccactcatttgaggcaaaattatgaaaaaatgcactagcattaatgtctatt 11665657  T
Q  324 agatcaagattcttctcaaaaaagcgatattcctcctcaaaagctcttattgtctctgctcc 385  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  11665656 agatcaagattcttctcaaaaaagcgatcttcctcctcaaaagctcttattgtcactgctcc 11665595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 20 - 385
Target Start/End: Original strand, 11707574 - 11707939
Alignment:
Q  20 atagagccatgccaataaatcctggaatgaaggaaattgaaatttagttatttgcataacgagagttgaagatattttttgaggatagnnnnnnntaatt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||       |||||    
T  11707574 atagagccatgccaataaatcctggaatgaaggaaattgaaatttagttatttgcataacgagagttgatgatagtttttgaagatagaagaaaataatt 11707673  T
Q  120 agaatataattataatacagaaacaatgacatttcggatattcaaataagcaaattctcaccggaactgaaagtccccgacggaagcataaccatgcaaa 219  Q
    |||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||| ||  |||||||||| || ||||| |||||||||||||    
T  11707674 agaatataattataataccgaaacaatgacatttcggatgttaaaataagcaaattctcaccagaggtgaaagtccctgatggaagtataaccatgcaaa 11707773  T
Q  220 gcgctgtagtggcaagaagacttgcacctattgtctctaaccgtaggatcaaccactcatttgaggcaaaattatgaaaaaatgcactagcattaatgtc 319  Q
    | |||| || |||||||| || |||||| ||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  11707774 gtgctgcagaggcaagaacacctgcaccaattgtttctaaccgttggatcaaccactcgtttgaggcaaaattatgaaaaaatgcactagcattaatgtc 11707873  T
Q  320 tattagatcaagattcttctcaaaaaagcgatattcctcctcaaaagctcttattgtctctgctcc 385  Q
     ||||||||||||||||||| ||| || |||| ||||||||||||||| ||||||||| |||||||    
T  11707874 aattagatcaagattcttctgaaagaaacgatcttcctcctcaaaagcccttattgtcactgctcc 11707939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 201 - 376
Target Start/End: Original strand, 11629476 - 11629651
Alignment:
Q  201 ggaagcataaccatgcaaagcgctgtagtggcaagaagacttgcacctattgtctctaaccgtaggatcaaccactcatttgaggcaaaattatgaaaaa 300  Q
    |||||||||||||||||||| |||| ||  |  ||||||  |||||  ||||| ||||||||| |||||||||||||||| ||||||||| |||| ||||    
T  11629476 ggaagcataaccatgcaaagtgctgcagcagtgagaagaactgcactgattgtttctaaccgttggatcaaccactcattcgaggcaaaactatggaaaa 11629575  T
Q  301 atgcactagcattaatgtctattagatcaagattcttctcaaaaaagcgatattcctcctcaaaagctcttattgt 376  Q
    | ||||| |||||| | || ||||||||||| |||||||||||| | |||| ||||||||||||||| || |||||    
T  11629576 aagcacttgcattattatcaattagatcaaggttcttctcaaaagaacgatcttcctcctcaaaagccctaattgt 11629651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 201 - 376
Target Start/End: Complemental strand, 11620936 - 11620761
Alignment:
Q  201 ggaagcataaccatgcaaagcgctgtagtggcaagaagacttgcacctattgtctctaaccgtaggatcaaccactcatttgaggcaaaattatgaaaaa 300  Q
    |||||||||||||||||||| | || || ||| |||| |  |||||  | ||| ||||| ||| |||||||||| || |||||||||||| |||||||||    
T  11620936 ggaagcataaccatgcaaagtgttgcagcggcgagaacaactgcactgagtgtttctaatcgttggatcaaccattcgtttgaggcaaaactatgaaaaa 11620837  T
Q  301 atgcactagcattaatgtctattagatcaagattcttctcaaaaaagcgatattcctcctcaaaagctcttattgt 376  Q
    | ||||| |||||| | || ||||||||||| |||||||||||| | |||| |||| |||||||||| ||||||||    
T  11620836 aagcacttgcattattatcaattagatcaaggttcttctcaaaagaacgatcttccccctcaaaagcccttattgt 11620761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 249 - 377
Target Start/End: Original strand, 11671435 - 11671563
Alignment:
Q  249 attgtctctaaccgtaggatcaaccactcatttgaggcaaaattatgaaaaaatgcactagcattaatgtctattagatcaagattcttctcaaaaaagc 348  Q
    ||||| ||||||||| ||||||||||||||||||| |||||| |||| ||||| ||||||||||| |  || ||||||  ||| |||||||||||| |      
T  11671435 attgtttctaaccgttggatcaaccactcatttgaagcaaaactatggaaaaaagcactagcatttaaatcaattagacaaaggttcttctcaaaagaat 11671534  T
Q  349 gatattcctcctcaaaagctcttattgtc 377  Q
    ||   ||||||| |||||| |||||||||    
T  11671535 gagcctcctccttaaaagcccttattgtc 11671563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 255 - 377
Target Start/End: Original strand, 12090709 - 12090831
Alignment:
Q  255 tctaaccgtaggatcaaccactcatttgaggcaaaattatgaaaaaatgcactagcattaatgtctattagatcaagattcttctcaaaaaagcgatatt 354  Q
    |||| |||| |||||| ||| ||||||||||||||| |||| || || ||| ||||||| |  || |||| |||||||||||| |  ||||| |||| ||    
T  12090709 tctacccgttggatcagccattcatttgaggcaaaactatggaagaaagcagtagcattgacatcaattaaatcaagattcttgttgaaaaaccgatctt 12090808  T
Q  355 cctcctcaaaagctcttattgtc 377  Q
    | |||||||||||||||||||||    
T  12090809 cttcctcaaaagctcttattgtc 12090831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 265 - 377
Target Start/End: Complemental strand, 11758707 - 11758595
Alignment:
Q  265 ggatcaaccactcatttgaggcaaaattatgaaaaaatgcactagcattaatgtctattagatcaagattcttctcaaaaaagcgatattcctcctcaaa 364  Q
    ||||||||||||||||||||| |||| | || || || ||||||||||| |  || |||| |||||||||||| |  ||||| || | ||| ||||||||    
T  11758707 ggatcaaccactcatttgaggaaaaactgtggaagaaagcactagcattgacatcaattaaatcaagattcttgttgaaaaaacggtcttcttcctcaaa 11758608  T
Q  365 agctcttattgtc 377  Q
    ||| |||||||||    
T  11758607 agcccttattgtc 11758595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 376
Target Start/End: Original strand, 11737186 - 11737307
Alignment:
Q  255 tctaaccgtaggatcaaccactcatttgaggcaaaattatgaaaaaatgcactagcattaatgtctattagatcaagattcttctcaaaaaagcgatatt 354  Q
    |||| |||| ||||||||||||||||||| |||||| | || || || ||||| ||||| |  || |||| || ||||||||| |  ||||| |||| ||    
T  11737186 tctacccgttggatcaaccactcatttgatgcaaaactgtggaagaaagcactcgcattgacatcaattaaattaagattcttgttgaaaaaacgatctt 11737285  T
Q  355 cctcctcaaaagctcttattgt 376  Q
    | ||||| ||||| ||||||||    
T  11737286 cttcctcgaaagcccttattgt 11737307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 11621115 - 11621083
Alignment:
Q  21 tagagccatgccaataaatcctggaatgaagga 53  Q
    ||||||||||||||||| |||||||||||||||    
T  11621115 tagagccatgccaataattcctggaatgaagga 11621083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 131; Significance: 7e-68; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 131 - 385
Target Start/End: Original strand, 16390874 - 16391128
Alignment:
Q  131 ataatacagaaacaatgacatttcggatattcaaataagcaaattctcaccggaactgaaagtccccgacggaagcataaccatgcaaagcgctgtagtg 230  Q
    |||||||||||||| ||||||||| ||  ||  ||||| |||||||||||| ||  |||||||||| |  ||||| |||||||||||||| |||| || |    
T  16390874 ataatacagaaacagtgacatttcagaggttagaataaccaaattctcaccagaggtgaaagtccctggtggaagtataaccatgcaaagtgctgcagag 16390973  T
Q  231 gcaagaagacttgcacctattgtctctaaccgtaggatcaaccactcatttgaggcaaaattatgaaaaaatgcactagcattaatgtctattagatcaa 330  Q
    ||||||| || ||||| |||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  16390974 gcaagaacacctgcacttattgtttctaaccgttggatcaaccactcgtttgaggcaaaattatgaaaaaatgaactagcattaatgtcaattagatcaa 16391073  T
Q  331 gattcttctcaaaaaagcgatattcctcctcaaaagctcttattgtctctgctcc 385  Q
    ||||||||| ||| || |||| |||||||||||||| |||||||||| |||||||    
T  16391074 gattcttctgaaagaaacgatcttcctcctcaaaagttcttattgtcactgctcc 16391128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 204 - 376
Target Start/End: Complemental strand, 15444 - 15272
Alignment:
Q  204 agcataaccatgcaaagcgctgtagtggcaagaagacttgcacctattgtctctaaccgtaggatcaaccactcatttgaggcaaaattatgaaaaaatg 303  Q
    ||||||||||||||||| |||| || ||  |||| | ||||||  ||| | ||||||||| |||||||||||||||||||||||| | |||| ||||| |    
T  15444 agcataaccatgcaaagtgctgcagcggtgagaacaattgcactgattatttctaaccgttggatcaaccactcatttgaggcaataatatggaaaaaag 15345  T
Q  304 cactagcattaatgtctattagatcaagattcttctcaaaaaagcgatattcctcctcaaaagctcttattgt 376  Q
     |||||||||||  || ||||||| ||| |||||||||||| | |||| ||| ||||||||||| ||||||||    
T  15344 aactagcattaacatcaattagataaaggttcttctcaaaagaacgatcttcatcctcaaaagcccttattgt 15272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 204 - 373
Target Start/End: Original strand, 5985 - 6154
Alignment:
Q  204 agcataaccatgcaaagcgctgtagtggcaagaagacttgcacctattgtctctaaccgtaggatcaaccactcatttgaggcaaaattatgaaaaaatg 303  Q
    ||||||||||||||||| |||  ||||| ||||| |  |||||  ||| | ||||||||| ||||||||||||| ||||||| |||| |||| ||||| |    
T  5985 agcataaccatgcaaagtgctccagtggtaagaacaactgcactgattatttctaaccgttggatcaaccactcttttgaggaaaaactatggaaaaaag 6084  T
Q  304 cactagcattaatgtctattagatcaagattcttctcaaaaaagcgatattcctcctcaaaagctcttat 373  Q
    |||||||||| || || ||||| ||||| || ||||||||||| | || ||||||||||||||| |||||    
T  6085 cactagcatttatatcaattaggtcaaggtttttctcaaaaaaacaatcttcctcctcaaaagcccttat 6154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 377
Target Start/End: Complemental strand, 44814165 - 44814043
Alignment:
Q  255 tctaaccgtaggatcaaccactcatttgaggcaaaattatgaaaaaatgcactagcattaatgtctattagatcaagattcttctcaaaaaagcgatatt 354  Q
    ||||||||| | |||||||||||||| | ||||||| ||||||| || | | ||||||| || || |||| | ||||||||||  ||||||| |||  ||    
T  44814165 tctaaccgttgaatcaaccactcattagcggcaaaactatgaaagaaaggagtagcattgatatcaattaaaccaagattctttacaaaaaaacgacctt 44814066  T
Q  355 cctcctcaaaagctcttattgtc 377  Q
    |||  |||||||| |||||||||    
T  44814065 cctgttcaaaagcccttattgtc 44814043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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