View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5110_high_30 (Length: 394)
Name: NF5110_high_30
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 37299660 - 37299332
Alignment:
| Q |
1 |
ctcctattccttattgcactcaaatcctagtacgtacaatttcacgaagcaaaatgttaaatcatatagttaatgttggttctatggtggaacaccttga |
100 |
Q |
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| T |
37299660 |
ctcctattccttattgcactcaaatcctagtatgtacaatttcacgaagcaaaatgttaaatcatatagttaatgttggttctatggtggaacaccttga |
37299561 |
T |
|
| Q |
101 |
tatatggtcacggtggatcaatacttaaaagccactttgaaattctaacgacaatcgacaacaaccattggaagtagaagctcaccgtcattcatattgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
37299560 |
tatatggtcacggtggatcaatacttaaaagccactttgaaattctaacgacaatcgacaacaaccattggaagtagaagctcaccgtccttcatattgt |
37299461 |
T |
|
| Q |
201 |
atttgttttcccctgtatttatcgaaccgacaccgatcaagtcagtgtctcagtcatgagggcgaggagacgataatttctacttccagaagacgatgtt |
300 |
Q |
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|||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
37299460 |
atttgttttcccttgtatttatcaaaccgacaccgataaagtcagtgtctcagtcatgagggcgaggatacgagaatttctacttccagaagacgatgtt |
37299361 |
T |
|
| Q |
301 |
tgtcgttgttggatttttcgaaagatttt |
329 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
37299360 |
tgtcgttgttggatttttcgaaagatttt |
37299332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 323 - 379
Target Start/End: Complemental strand, 37299301 - 37299245
Alignment:
| Q |
323 |
agattttgcacctccctcactattggatttgaaaagtacattatattctgtggtttt |
379 |
Q |
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||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
37299301 |
agattttccacctccctcactgctggatttgaaaagtacattatattctgtggtttt |
37299245 |
T |
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