View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5110_high_34 (Length: 375)
Name: NF5110_high_34
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110_high_34 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 120 - 358
Target Start/End: Complemental strand, 13793524 - 13793282
Alignment:
| Q |
120 |
actcgtatgtaaaatttgttactgaataggtctaattgatcatatgtactcataaatataaacttcaaaattgactttaccaaaccgcgtc----ttttg |
215 |
Q |
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| T |
13793524 |
actcgtatgtaaaaattgttactgaataggtctaattgatcatatgtactcataaatataaacttcaaaattgactttatcaaaccgcgtcataattttg |
13793425 |
T |
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| Q |
216 |
caccctttgatcgggggtccttgctacgtcactggactatggtaaatgccctggatcttgaaaaagctatgtgttatagataaagacaaggctctatatc |
315 |
Q |
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| T |
13793424 |
caccctttgatcggggatccttgctacgccactggactttggtaaatgccctggatcttgaaaaagctctgtgttatagataaagacaaggctctatatc |
13793325 |
T |
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| Q |
316 |
aagaataatggcaactttgtgaaagtcaatgctatgtgttcat |
358 |
Q |
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| T |
13793324 |
aagaataatggcaactttgtgaaagtcaatgctacgtgttcat |
13793282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 39 - 94
Target Start/End: Complemental strand, 13794971 - 13794916
Alignment:
| Q |
39 |
gattgtagacaaaggtgcaacatatcacacttgctatgacataaattggcttaaag |
94 |
Q |
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| T |
13794971 |
gattgtagacataggtgcaacatatcacacttgctatgacataaattggcttaaag |
13794916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 205
Target Start/End: Original strand, 33931915 - 33931993
Alignment:
| Q |
127 |
tgtaaaatttgttactgaataggtctaatt-gatcatatgtactcataaatataaacttcaaaattgactttaccaaacc |
205 |
Q |
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| T |
33931915 |
tgtaaaaattgttactaaataggtctaatttgaccatatgaactcataa-tataaacttgaaaattgacttgaccaaacc |
33931993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 16702979 - 16703044
Alignment:
| Q |
146 |
taggtctaattga-tcatatgtactcataaatataaacttcaaaattgactttaccaaaccgcgtc |
210 |
Q |
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| T |
16702979 |
taggtctaatttaatcagatgaactcataaatataaacttaaaaaatgactttaccaaaccgcgtc |
16703044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 279 - 344
Target Start/End: Original strand, 34494057 - 34494122
Alignment:
| Q |
279 |
aagctatgtgttatagataaagacaaggctctatatcaagaataatggcaactttgtgaaagtcaa |
344 |
Q |
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| T |
34494057 |
aagctatgtgttatagatatagacaaggctctatatcaagattaaggtcaactctatggaagtcaa |
34494122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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