View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5110_high_35 (Length: 374)
Name: NF5110_high_35
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110_high_35 |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 11 - 358
Target Start/End: Complemental strand, 5441427 - 5441075
Alignment:
| Q |
11 |
atgaattccaatgtgtagaaataatgacctgatcaaggatcaatgaatattgaaatacacgattccaaaacttgatcaagctaaggaccccaattcaagt |
110 |
Q |
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| T |
5441427 |
atgaattccaatgtgtagaaataatgagttgatcaaggatcaatgaatattgaaatacacgattccaaaacttgatcaagctaaggaccccaattcaagt |
5441328 |
T |
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| Q |
111 |
tctttggaaattgcaaaatctt-----cctctgcccaattatttgtgtattttccatacatttccccattccccaatttttcttcaataagacttttgat |
205 |
Q |
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| T |
5441327 |
tctttggaaattgcaaaatcttagcttcctctgcccaattatttgtgtattttccatacatttccccattccccaatttttcttcaataagacttttgat |
5441228 |
T |
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| Q |
206 |
atagaagaaatacccctgttttctttgcctataaatacgagttcttttttatcaatcacatccagattttcagtttactacccaaaacatcattttcttt |
305 |
Q |
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| T |
5441227 |
atagaagaaatacccctgttttctttgcctataaatacgagttcttttttatcaatcacatccagattttcagtttactacccaaaacatcattttcttt |
5441128 |
T |
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| Q |
306 |
tgttctctcctctcaaactctcaattgtcgtggcaataacaaaaagaaaagcc |
358 |
Q |
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| T |
5441127 |
tgttctctcctctcaaactctcgtttgtcgtggcaataacaaaaagaaaagcc |
5441075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 5444830 - 5444879
Alignment:
| Q |
11 |
atgaattccaatgtgtagaaataatgacctgatcaaggatcaatgaatat |
60 |
Q |
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| T |
5444830 |
atgaattcctatgtgtagaaataatgagttgatcaaggatcaatgaatat |
5444879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 322
Target Start/End: Original strand, 5445035 - 5445107
Alignment:
| Q |
251 |
tttttatcaatcacatccagattttcagtttactacccaaaacatcatt-ttcttttgttctctcctctcaaa |
322 |
Q |
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| T |
5445035 |
ttttgatcaatcagatccatattctcggttcactaaccaaaacaccattcttcttttgttctctcctctcaaa |
5445107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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