View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5110_high_40 (Length: 349)
Name: NF5110_high_40
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110_high_40 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 9 - 331
Target Start/End: Original strand, 32688671 - 32688993
Alignment:
| Q |
9 |
gagatgaaagtaaaggtattgcaactgttaacttactgtctcaacaattaaattggctaagcgtccaattgctcatgggagaaccaaacacactgacata |
108 |
Q |
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| T |
32688671 |
gagatgaaagtaaaggtattgcaactgttaacttgctgtctcaacaattaaattggctaagcgtccaattgctcatgggagaaccaaacacactgacata |
32688770 |
T |
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| Q |
109 |
acaacattaggtttcatttgcttaaaagtgaaaactgaaaatcaagaaaatatgaacttggaactgaggagaacgttagttctggtttccgttggatatt |
208 |
Q |
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| T |
32688771 |
acgacatgaggtttcatttgcttaaaagtgaaaactgaaaatcaagaaaatatgaacttggaactgaggagaacgttagttctggtttccgttggatatt |
32688870 |
T |
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| Q |
209 |
tagttatatgtgaaaagtttaaaatcatgaattcccacatcactaactgaagaatataaaattctctctatttaaaccccacctacttacctattaaaac |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32688871 |
tagttatatgtgaaaagtttaaaatcatgaattcccacatcactaactgaagaatataaaattctctctatttaaaccccacctacttacctattaaaac |
32688970 |
T |
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| Q |
309 |
aagcattttctgtatgagttaac |
331 |
Q |
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||||||||||||||||||||||| |
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| T |
32688971 |
aagcattttctgtatgagttaac |
32688993 |
T |
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