View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5110_high_42 (Length: 347)
Name: NF5110_high_42
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110_high_42 |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 5949376 - 5949706
Alignment:
| Q |
1 |
ttactttctagaagtggactactaaagaaactaattgcagagtccacaagtgaggatggatcaagtagtattttgcaacttcatgatgttcctggtggag |
100 |
Q |
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| T |
5949376 |
ttactttctagaagtggactactaaagaaactaattgcagagtccacaagtgaggatggatcaagtagtattttgcaacttcatgatgttcctggtggag |
5949475 |
T |
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| Q |
101 |
ccaaaacatttgagctcataacaaaattttgctatggtgcgaaattagaaatcacagcattgaatgtagttagtctaagatgtgcagcagagcatctcca |
200 |
Q |
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| T |
5949476 |
ccaaaacatttgagctcataacaaaattttgctatggtgtgaaattagaaatcacagcattgaatgtagttagtctaagatgtgcagcagagcatctcca |
5949575 |
T |
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| Q |
201 |
aatgactgaaaactatggtgcagacaatcttattggttacacagaatcttttctaaatgaagttttcagcaattggccagactccatcaaagcgctcgag |
300 |
Q |
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| T |
5949576 |
aatgactgaaaactatggtgcagacaatcttattggttacacagaatcttttctaaatgaagttttcagcaattggccagactccatcaaagcgctcgag |
5949675 |
T |
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| Q |
301 |
acgtgcgaggaagtgcaaaactttgcagaag |
331 |
Q |
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| T |
5949676 |
acatgcgaggaagtgcaaaactttgcagaag |
5949706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 7 - 220
Target Start/End: Complemental strand, 28321537 - 28321324
Alignment:
| Q |
7 |
tctagaagtggactactaaagaaactaattgcagagtccacaagtgaggatggatcaagtagtattttgcaacttcatgatgttcctggtggagccaaaa |
106 |
Q |
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| T |
28321537 |
tctagaagtggattactaaagaaactttttgctgactccacaaatgaagatggatcaaattctattttacaacttcatgatgtacctggtggagacaaaa |
28321438 |
T |
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| Q |
107 |
catttgagctcataacaaaattttgctatggtgcgaaattagaaatcacagcattgaatgtagttagtctaagatgtgcagcagagcatctccaaatgac |
206 |
Q |
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|||||||| |||||||||| ||||||||||||| ||| ||||||||||| |||| ||||| ||||||||||||||||||||||| || | ||||||| |
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| T |
28321437 |
catttgagatcataacaaagttttgctatggtgtaaaactagaaatcacaccattaaatgtggttagtctaagatgtgcagcagaatatttacaaatgaa |
28321338 |
T |
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| Q |
207 |
tgaaaactatggtg |
220 |
Q |
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||| || ||||||| |
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| T |
28321337 |
tgagaattatggtg |
28321324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 293
Target Start/End: Complemental strand, 28321287 - 28321251
Alignment:
| Q |
257 |
atgaagttttcagcaattggccagactccatcaaagc |
293 |
Q |
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| T |
28321287 |
atgaagttttcagcaattggccagactcaataaaagc |
28321251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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