View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5110_high_43 (Length: 346)

Name: NF5110_high_43
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5110_high_43
NF5110_high_43
[»] chr1 (5 HSPs)
chr1 (23-209)||(48593751-48593937)
chr1 (23-209)||(48598362-48598548)
chr1 (226-266)||(48593931-48593971)
chr1 (226-266)||(48598542-48598582)
chr1 (309-337)||(49946712-49946740)
[»] chr7 (1 HSPs)
chr7 (302-337)||(30891119-30891154)
[»] chr4 (1 HSPs)
chr4 (309-337)||(45741982-45742010)
[»] chr3 (1 HSPs)
chr3 (309-337)||(24560309-24560337)
[»] chr2 (2 HSPs)
chr2 (309-337)||(20545801-20545829)
chr2 (309-337)||(29525857-29525885)


Alignment Details
Target: chr1 (Bit Score: 171; Significance: 9e-92; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 23 - 209
Target Start/End: Original strand, 48593751 - 48593937
Alignment:
Q  23 tcacacacctaaatctccttttatctatcttttctggctttctatctcatttccatatactcttcttataccacactggatatatgaaagtgtattttaa 122  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48593751 tcacacacctaaatctccttttatctatcttttttggctttctatctcatttccatatactcttcttataccacactggatatatgaaagtgtattttaa 48593850  T
Q  123 ttcctttagcatttcatctgtgtttgtataatgcaatttagagattgaacaaacaattgcactgggattgggacgggttgaatagtt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||    
T  48593851 ttcctttagcatttcatctgtgtttgtataatgcaatttagagattgaacaaacatttgcattgggattgggacgggttgaagagtt 48593937  T

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Target: chr1; HSP #2
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 23 - 209
Target Start/End: Original strand, 48598362 - 48598548
Alignment:
Q  23 tcacacacctaaatctccttttatctatcttttctggctttctatctcatttccatatactcttcttataccacactggatatatgaaagtgtattttaa 122  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48598362 tcacacacctaaatctccttttatctatcttttttggctttctatctcatttccatatactcttcttataccacactggatatatgaaagtgtattttaa 48598461  T
Q  123 ttcctttagcatttcatctgtgtttgtataatgcaatttagagattgaacaaacaattgcactgggattgggacgggttgaatagtt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||    
T  48598462 ttcctttagcatttcatctgtgtttgtataatgcaatttagagattgaacaaacatttgcattgggattgggacgggttgaagagtt 48598548  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 48593931 - 48593971
Alignment:
Q  226 aagagtttatttggatagagagtttaagaaggtagagttca 266  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  48593931 aagagtttgtttggatagagagtttaagaaggtagagttca 48593971  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 48598542 - 48598582
Alignment:
Q  226 aagagtttatttggatagagagtttaagaaggtagagttca 266  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  48598542 aagagtttgtttggatagagagtttaagaaggtagagttca 48598582  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 337
Target Start/End: Complemental strand, 49946740 - 49946712
Alignment:
Q  309 aaataaattaaatgtgattgaagtattat 337  Q
    |||||||||||||||||||||||||||||    
T  49946740 aaataaattaaatgtgattgaagtattat 49946712  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 302 - 337
Target Start/End: Complemental strand, 30891154 - 30891119
Alignment:
Q  302 tttttataaataaattaaatgtgattgaagtattat 337  Q
    ||||| ||||||||||||||||||||||||||||||    
T  30891154 tttttttaaataaattaaatgtgattgaagtattat 30891119  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 337
Target Start/End: Original strand, 45741982 - 45742010
Alignment:
Q  309 aaataaattaaatgtgattgaagtattat 337  Q
    |||||||||||||||||||||||||||||    
T  45741982 aaataaattaaatgtgattgaagtattat 45742010  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 337
Target Start/End: Original strand, 24560309 - 24560337
Alignment:
Q  309 aaataaattaaatgtgattgaagtattat 337  Q
    |||||||||||||||||||||||||||||    
T  24560309 aaataaattaaatgtgattgaagtattat 24560337  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 337
Target Start/End: Original strand, 20545801 - 20545829
Alignment:
Q  309 aaataaattaaatgtgattgaagtattat 337  Q
    |||||||||||||||||||||||||||||    
T  20545801 aaataaattaaatgtgattgaagtattat 20545829  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 337
Target Start/End: Complemental strand, 29525885 - 29525857
Alignment:
Q  309 aaataaattaaatgtgattgaagtattat 337  Q
    |||||||||||||||||||||||||||||    
T  29525885 aaataaattaaatgtgattgaagtattat 29525857  T

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