View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5110_high_49 (Length: 310)
Name: NF5110_high_49
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110_high_49 |
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Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 38231370 - 38231661
Alignment:
| Q |
1 |
atgtaaaagaaaaaagatcaaacttgcttcagccttgcaagtggtatttctacacatgaagaaacaatggaaatgattgggagctttgatttgaagccga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
38231370 |
atgtaaaagaaaaaagatcaaacttgcttcagccttgcaagtggtatttctacacatgaagaaacaatggaaacatttgggagctttgatttgaagccga |
38231469 |
T |
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| Q |
101 |
gccaattacaacagaatattagaattatgttatgaatttggttttggtttctttggatttgtttgtgagttgaggatctttatggttcataataatttca |
200 |
Q |
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| T |
38231470 |
gccaattacaacagaaaattagaattatgttatgaatttggttttggtttctttggatttgtttgtgagttgaggatctttatggttcataataatttca |
38231569 |
T |
|
| Q |
201 |
agactagtctaatttcaatctatttgattattagtattaagtttttagactttgtaatgagctcaaccactttgagagagagagcttgcaat |
292 |
Q |
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| T |
38231570 |
agactagtctaatttcaatctatttgattattagtattaagtttttagactttgtaatgagctcaactactttgagagagagagcttgcaat |
38231661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 150
Target Start/End: Complemental strand, 19831151 - 19831011
Alignment:
| Q |
10 |
aaaaaagatcaaacttgcttcagccttgcaagtggtatttctaca-catgaagaaacaatggaaatgattgggagctttgatttgaagccgagccaatta |
108 |
Q |
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| T |
19831151 |
aaaaaagattgaacttgcttcaacgttgcaagtggtatttctatggcttggaaaaacaatagaagggattggaagcttggatttgaagtagagccaatta |
19831052 |
T |
|
| Q |
109 |
caacagaatattagaattatgttatgaatttggttttggttt |
150 |
Q |
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| T |
19831051 |
cagcagaaaattagaa-tatcatatgaatttggttttggttt |
19831011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 9e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 123 - 201
Target Start/End: Complemental strand, 30152154 - 30152076
Alignment:
| Q |
123 |
aattatgttatgaatttggttttggtttctttggatttgtttgtgagttgaggatctttatggttcataataatttcaa |
201 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
30152154 |
aattatgttatgaatttggttttggtttctttgggtttgtttgtaagttgaggttctttatggttcataataatttcaa |
30152076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 284
Target Start/End: Complemental strand, 30152068 - 30152009
Alignment:
| Q |
226 |
gattattagtattaagtttttagac-tttgtaatgagctcaaccactttgagagagagag |
284 |
Q |
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| T |
30152068 |
gattattagtattacgcttttatacatttgtaatgagctcagccactttgagagagagag |
30152009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 9e-30; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 123 - 201
Target Start/End: Complemental strand, 7694936 - 7694858
Alignment:
| Q |
123 |
aattatgttatgaatttggttttggtttctttggatttgtttgtgagttgaggatctttatggttcataataatttcaa |
201 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
7694936 |
aattatgttatgaatttggttttggtttctttgggtttgtttgtaagttgaggttctttatggttcataataatttcaa |
7694858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 282
Target Start/End: Complemental strand, 7694850 - 7694793
Alignment:
| Q |
226 |
gattattagtattaagtttttagac-tttgtaatgagctcaaccactttgagagagag |
282 |
Q |
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|||||||||||||||| ||||| || ||||||||||||||| |||||||||||||||| |
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| T |
7694850 |
gattattagtattaagcttttatacatttgtaatgagctcagccactttgagagagag |
7694793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 193
Target Start/End: Original strand, 55862915 - 55863098
Alignment:
| Q |
10 |
aaaaaagatcaaacttgcttcagccttgcaagtggtatttctac-acatgaagaaacaatggaaatgattgggagctttgatttgaagccgagccaatta |
108 |
Q |
| |
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|||| ||| |||||||||||||||||||| | ||| ||||||| |||||| |||| ||| ||| |||| || ||||| |||||||||| ||||||||| |
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| T |
55862915 |
aaaatagaccaaacttgcttcagccttgccaatggcatttctatgacatgatgaaataatagaagtgataggtagcttggatttgaagcatagccaatta |
55863014 |
T |
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| Q |
109 |
caacagaatattagaattatgttatgaatttggttttggtttctttggatttgtttgtgagttgaggatctttatggttcataat |
193 |
Q |
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|||||||| ||||||| | | | ||| | |||||||||||||||| ||||||||||| |||||| ||||||||||||||||| |
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| T |
55863015 |
caacagaaaattagaa-cacgacaggaaactagttttggtttctttgggtttgtttgtgaattgaggttctttatggttcataat |
55863098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 210 - 292
Target Start/End: Original strand, 55863095 - 55863179
Alignment:
| Q |
210 |
taatttcaatctatttgattattagtattaag-tttttagac-tttgtaatgagctcaaccactttgagagagagagcttgcaat |
292 |
Q |
| |
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||||||||| || ||||||||||||||||||| ||||| ||| ||| |||| |||||| ||| |||||||||||||||||||||| |
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| T |
55863095 |
taatttcaacctctttgattattagtattaagcttttttgacatttttaataagctcacccagtttgagagagagagcttgcaat |
55863179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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