View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5110_high_57 (Length: 297)
Name: NF5110_high_57
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110_high_57 |
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Alignment Details
Target: chr1 (Bit Score: 134; Significance: 9e-70; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 119 - 283
Target Start/End: Complemental strand, 42190374 - 42190206
Alignment:
| Q |
119 |
attgcgtaaagttttagacaatagttctataattttaaataaatgtaccaatttttgtagttaaaaactgtgaagaggaaacagactaaagagaat-aaa |
217 |
Q |
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| T |
42190374 |
attgcgtaaagttttagacaatagttctataattttaaataaatgtaccaatttttgtagttaaaaactgtgaagaggaaacagactaaagagaataaaa |
42190275 |
T |
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| Q |
218 |
gactatat-aaaaaattactttttt--catttactcttattaacaattattacttttatcaattatctg |
283 |
Q |
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|||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
42190274 |
gactatataaaaaaattactttttttctatttactcttattaacaattattacttttatcaattctctg |
42190206 |
T |
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