View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5110_high_58 (Length: 296)
Name: NF5110_high_58
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110_high_58 |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 11 - 282
Target Start/End: Complemental strand, 1224154 - 1223883
Alignment:
| Q |
11 |
caaaggaagtgggatttgaatttgtaatagagaaagagaacgttgttgagaatgaagacgtggtgtttgttgaaatgtcaaagagagaaatggggtgttt |
110 |
Q |
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| T |
1224154 |
caaaggaagtgggatttgaatttgtaatagagaaagagaacgttgttgagaatgaagacgtggtgtttgttgaaatgtcaaagagagaaatggggtgttt |
1224055 |
T |
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| Q |
111 |
gtagatgatagcaccggtggagaaagtggtgggttgagttaaggaaacgatgctgttggtggttagagatgaatcgccgaggaaggtgaggttggtggcg |
210 |
Q |
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| T |
1224054 |
gtagatgatagcaccggtggagaaagtggtgggttgagttaaggaaacgacgccgttggtggttagagatgaatcgccgaggaaggtgaggttggtggcg |
1223955 |
T |
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| Q |
211 |
gtgtctgcggtggtaaagtaagggaagtcgaggtggatgttaccggcaccggaggcggtgaggatgaaggtg |
282 |
Q |
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| T |
1223954 |
gtgtctgcggtggtaaagtaagggaagttgaggtggatgttaccggcaccggaggcggtgaggatgaaggtg |
1223883 |
T |
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Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 11 - 282
Target Start/End: Complemental strand, 41962680 - 41962409
Alignment:
| Q |
11 |
caaaggaagtgggatttgaatttgtaatagagaaagagaacgttgttgagaatgaagacgtggtgtttgttgaaatgtcaaagagagaaatggggtgttt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41962680 |
caaaggaagtgggatttgaatttgtaatagagaaagagaacgttgttgagaatgaagacgtggtgtttgttgaaatgtcaaagagagaaatggggtgttt |
41962581 |
T |
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| Q |
111 |
gtagatgatagcaccggtggagaaagtggtgggttgagttaaggaaacgatgctgttggtggttagagatgaatcgccgaggaaggtgaggttggtggcg |
210 |
Q |
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| T |
41962580 |
gtagatgatagcaccggtggagaaagtggtgggctgagttaaggaaacgacgccgttggtggttagagatgaatcgccgaggaaggtgaggttggtggcg |
41962481 |
T |
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| Q |
211 |
gtgtctgcggtggtaaagtaagggaagtcgaggtggatgttaccggcaccggaggcggtgaggatgaaggtg |
282 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41962480 |
gtgtctgcggtggtgaagtaagggaagtcgaggtggatgttaccggcaccggaggcggtgaggatgaaggtg |
41962409 |
T |
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