View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5110_high_59 (Length: 288)
Name: NF5110_high_59
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110_high_59 |
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Alignment Details
Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 11 - 151
Target Start/End: Original strand, 33138046 - 33138185
Alignment:
| Q |
11 |
cacagaaaattcaaatcgctatatacgtgcaaagcttttttgggtaacatcgaaattaattcagatcgagaattagaaaaagcaaattgagtgaacatat |
110 |
Q |
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| T |
33138046 |
cacagaaaattcaaatcgctatatacgtgcaaagcttttttgagtaacattgaaattaattcagatcgagaattagaaagagcaaattgagtgaatatat |
33138145 |
T |
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| Q |
111 |
ctaagaacattgaaaaataacaatgcagtatgagtgtgtgt |
151 |
Q |
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| T |
33138146 |
ctaagaacattgaaaaataacaatgca-tatgagtgtgtgt |
33138185 |
T |
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Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 180 - 273
Target Start/End: Original strand, 33138221 - 33138314
Alignment:
| Q |
180 |
gggagttatgcatcttaatccaaaatgaccattgaaaacttatgttcaaaatctttatataaaattgaaaacttatattacacacaaattatgt |
273 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33138221 |
gggagttatgcatcttaatccaaaatgaccattggaaacttatgttcaaaatctttatataaaattgaaaacttatattacacacaaattatgt |
33138314 |
T |
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