View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5110_high_83 (Length: 245)
Name: NF5110_high_83
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110_high_83 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 245
Target Start/End: Original strand, 29930004 - 29930240
Alignment:
| Q |
13 |
atatcaataaataaacgagttattcattctacaagatgtatattccttcttagtattggagctgctattttcattgcatcaaattatgctctgaattaag |
112 |
Q |
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| T |
29930004 |
atatcaataaataaacgagttactcattctacaagatgtatattccttcttagtattggagctgctattttcattgcatcaaattatgctctgaattaag |
29930103 |
T |
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| Q |
113 |
acatttgacaacaattttcgataattcttagcggcaatcaaattgcaaatctccatttattttaagc-----aagatgatcttaactctcaatgtattgc |
207 |
Q |
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| T |
29930104 |
acatttgacaacaattttcgataattcctagcggcaatccaattgcaaatctccatttattttaagcaaatgaagatgatcttaactctcaatgcattgc |
29930203 |
T |
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| Q |
208 |
tttaaagaagactgtttagaaaaattatgattctaaat |
245 |
Q |
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| T |
29930204 |
tttaaagaagactgtttag-aaaattatgattctaaat |
29930240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 103
Target Start/End: Original strand, 28260998 - 28261065
Alignment:
| Q |
35 |
ttcattctacaagatgtatattccttcttagtattggagctgctattttcattgcatcaaattatgctc |
103 |
Q |
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| T |
28260998 |
ttcattctacaatatgtattgtccttctt-gtattggagttgctcttttcattacttcaaattatgctc |
28261065 |
T |
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