View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5110_high_90 (Length: 239)
Name: NF5110_high_90
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110_high_90 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 56278259 - 56278481
Alignment:
| Q |
17 |
atcctcttggcttcaaagatgggaaattgctgattaaggtttctgcagagttatacatctatgacatgaagaatcacaagattgctcatgcttgttcctt |
116 |
Q |
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| T |
56278259 |
atcctcttggcttcaaagatgggaaattgctgattaaggtttctgcagagttatacatctatgacatgaagaatcacaagattgctcatgcttgttcctt |
56278358 |
T |
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| Q |
117 |
tctacaactcaacccacaatccttgtcgcatcctacagtatttcctcattccttgactttggtttccctaaaagatccttagtatagaactaactcctat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56278359 |
tctacaactcaacccacaatccttgtcgcatcctacagtatttcctcattccttgactttggtttccctaaaagatccttagtatagaactaactcctat |
56278458 |
T |
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| Q |
217 |
atattagcttttattatcggatt |
239 |
Q |
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||||||||||||||||||||||| |
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| T |
56278459 |
atattagcttttattatcggatt |
56278481 |
T |
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