View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5110_high_91 (Length: 239)

Name: NF5110_high_91
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5110_high_91
NF5110_high_91
[»] chr7 (3 HSPs)
chr7 (15-133)||(34905590-34905708)
chr7 (129-230)||(34902774-34902875)
chr7 (129-194)||(3626138-3626203)
[»] chr4 (4 HSPs)
chr4 (130-223)||(21180890-21180982)
chr4 (143-223)||(29581355-29581435)
chr4 (129-194)||(34132842-34132907)
chr4 (129-194)||(53912631-53912696)
[»] chr6 (5 HSPs)
chr6 (129-223)||(2851645-2851739)
chr6 (129-194)||(513274-513339)
chr6 (129-194)||(8370330-8370395)
chr6 (129-194)||(15137841-15137906)
chr6 (129-194)||(34844535-34844600)
[»] chr2 (4 HSPs)
chr2 (129-223)||(33224816-33224907)
chr2 (129-194)||(21467194-21467259)
chr2 (129-194)||(24840333-24840398)
chr2 (129-194)||(26647498-26647563)
[»] chr8 (1 HSPs)
chr8 (129-194)||(28522457-28522522)
[»] chr5 (1 HSPs)
chr5 (129-194)||(39175759-39175824)
[»] chr3 (1 HSPs)
chr3 (129-194)||(35203749-35203814)


Alignment Details
Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 15 - 133
Target Start/End: Complemental strand, 34905708 - 34905590
Alignment:
Q  15 ataatagactatatttttatctaattcacaannnnnnngctcagtgttcttttgttcttgtttaaagtgctctttatacaacacactagttttatagtgt 114  Q
    |||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34905708 ataatagactatatttttatctaattcacaatttttttgctcagtgttcttttgttcttgtttaaagtgctctttatacaacacactagttttatagtgt 34905609  T
Q  115 gtattgaaagtttggaatt 133  Q
    |||||||||||||||||||    
T  34905608 gtattgaaagtttggaatt 34905590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 129 - 230
Target Start/End: Complemental strand, 34902875 - 34902774
Alignment:
Q  129 gaatttgtgtagaatataaatttataattctaaagcataataatttggtgtatgatattttgtgttcttgaaataagtttcacgggaaaaagtaagtata 228  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||    
T  34902875 gaatttgtgtagattataaatttataattctaaagcataataatttggtgtataacattttgtgttcttgaaataagtttcacgggaaaaagtaaatata 34902776  T
Q  229 at 230  Q
    ||    
T  34902775 at 34902774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 129 - 194
Target Start/End: Original strand, 3626138 - 3626203
Alignment:
Q  129 gaatttgtgtagaatataaatttataattctaaagcataataatttggtgtatgatattttgtgtt 194  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  3626138 gaatttgtgtaaattataaatttataattctaaagcataataatttggtgtataacattttgtgtt 3626203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 130 - 223
Target Start/End: Original strand, 21180890 - 21180982
Alignment:
Q  130 aatttgtgtagaatataaatttataattctaaagcataataatttggtgtatgatattttgtgttcttgaaataagtttcacgggaaaaagtaa 223  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||||||||| |  ||||||||||||||||||||||||||||||| ||||||    
T  21180890 aatttgtgtagattataaatttataattctaaagtataataatttggtgtat-aacttttgtgttcttgaaataagtttcacgggaagaagtaa 21180982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 143 - 223
Target Start/End: Original strand, 29581355 - 29581435
Alignment:
Q  143 tataaatttataattctaaagcataataatttggtgtatgatattttgtgttcttgaaataagtttcacgggaaaaagtaa 223  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||| ||||||    
T  29581355 tataaatttataattctaaagcataataatttggtgtataattttttgtgttcttgaaatatgtttcacgggaagaagtaa 29581435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 129 - 194
Target Start/End: Complemental strand, 34132907 - 34132842
Alignment:
Q  129 gaatttgtgtagaatataaatttataattctaaagcataataatttggtgtatgatattttgtgtt 194  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  34132907 gaatttgtgtaaattataaatttataattctaaagcataataatttggtgtataacattttgtgtt 34132842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 129 - 194
Target Start/End: Complemental strand, 53912696 - 53912631
Alignment:
Q  129 gaatttgtgtagaatataaatttataattctaaagcataataatttggtgtatgatattttgtgtt 194  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  53912696 gaatttgtgtaaattataaatttataattctaaagcataataatttggtgtataacattttgtgtt 53912631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 129 - 223
Target Start/End: Complemental strand, 2851739 - 2851645
Alignment:
Q  129 gaatttgtgtagaatataaatttataattctaaagcataataatttggtgtatgatattttgtgttcttgaaataagtttcacgggaaaaagtaa 223  Q
    ||||||||||||| | ||||||||||||||||||||||||||||| ||||||| |  |||||||||||||| |||||||||||||||| ||||||    
T  2851739 gaatttgtgtagattttaaatttataattctaaagcataataattcggtgtataactttttgtgttcttgagataagtttcacgggaagaagtaa 2851645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 129 - 194
Target Start/End: Original strand, 513274 - 513339
Alignment:
Q  129 gaatttgtgtagaatataaatttataattctaaagcataataatttggtgtatgatattttgtgtt 194  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  513274 gaatttgtgtaaattataaatttataattctaaagcataataatttggtgtataacattttgtgtt 513339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 129 - 194
Target Start/End: Original strand, 8370330 - 8370395
Alignment:
Q  129 gaatttgtgtagaatataaatttataattctaaagcataataatttggtgtatgatattttgtgtt 194  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  8370330 gaatttgtgtaaattataaatttataattctaaagcataataatttggtgtataacattttgtgtt 8370395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 129 - 194
Target Start/End: Complemental strand, 15137906 - 15137841
Alignment:
Q  129 gaatttgtgtagaatataaatttataattctaaagcataataatttggtgtatgatattttgtgtt 194  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  15137906 gaatttgtgtaaattataaatttataattctaaagcataataatttggtgtataacattttgtgtt 15137841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 129 - 194
Target Start/End: Original strand, 34844535 - 34844600
Alignment:
Q  129 gaatttgtgtagaatataaatttataattctaaagcataataatttggtgtatgatattttgtgtt 194  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  34844535 gaatttgtgtaaattataaatttataattctaaagcataataatttggtgtataacattttgtgtt 34844600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 129 - 223
Target Start/End: Complemental strand, 33224907 - 33224816
Alignment:
Q  129 gaatttgtgtagaatataaatttataattctaaagcataataatttggtgtatgatattttgtgttcttgaaataagtttcacgggaaaaagtaa 223  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||| | ||||||||   |||||||| |||||| ||||| ||||||    
T  33224907 gaatttgtgtaaattataaatttataattctaaagcataataatttggtgtattacattttgtg---ttgaaatatgtttcatgggaagaagtaa 33224816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 129 - 194
Target Start/End: Complemental strand, 21467259 - 21467194
Alignment:
Q  129 gaatttgtgtagaatataaatttataattctaaagcataataatttggtgtatgatattttgtgtt 194  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  21467259 gaatttgtgtaaattataaatttataattctaaagcataataatttggtgtataacattttgtgtt 21467194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 129 - 194
Target Start/End: Original strand, 24840333 - 24840398
Alignment:
Q  129 gaatttgtgtagaatataaatttataattctaaagcataataatttggtgtatgatattttgtgtt 194  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  24840333 gaatttgtgtaaattataaatttataattctaaagcataataatttggtgtataacattttgtgtt 24840398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 129 - 194
Target Start/End: Original strand, 26647498 - 26647563
Alignment:
Q  129 gaatttgtgtagaatataaatttataattctaaagcataataatttggtgtatgatattttgtgtt 194  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  26647498 gaatttgtgtaaattataaatttataattctaaagcataataatttggtgtataacattttgtgtt 26647563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 129 - 194
Target Start/End: Original strand, 28522457 - 28522522
Alignment:
Q  129 gaatttgtgtagaatataaatttataattctaaagcataataatttggtgtatgatattttgtgtt 194  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  28522457 gaatttgtgtaaattataaatttataattctaaagcataataatttggtgtataacattttgtgtt 28522522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 129 - 194
Target Start/End: Complemental strand, 39175824 - 39175759
Alignment:
Q  129 gaatttgtgtagaatataaatttataattctaaagcataataatttggtgtatgatattttgtgtt 194  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  39175824 gaatttgtgtaaattataaatttataattctaaagcataataatttggtgtataacattttgtgtt 39175759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 129 - 194
Target Start/End: Original strand, 35203749 - 35203814
Alignment:
Q  129 gaatttgtgtagaatataaatttataattctaaagcataataatttggtgtatgatattttgtgtt 194  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  35203749 gaatttgtgtaaattataaatttataattctaaagcataataatttggtgtataacattttgtgtt 35203814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University