View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5110_high_92 (Length: 238)
Name: NF5110_high_92
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110_high_92 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 1833265 - 1833483
Alignment:
| Q |
1 |
tcatcaatataggaattaatgttaatttagtccaaaatctgttaagatcttatgtgtcatctacttgtgtctctgcatgctaggtattaaaattgtattt |
100 |
Q |
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| T |
1833265 |
tcatcaatataggagttaatgttaatttagtccaaaatctgttaagat---atgtgtcatctacttgtgtctctgcatgctaggtattaaaattgtattt |
1833361 |
T |
|
| Q |
101 |
gcttcttggctttatttgtttgtttgtgttggtctactggagaataatgcatttacctttcaatattttgtcctatatggtaatctgattatgattgaaa |
200 |
Q |
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| T |
1833362 |
gcttcttggctttatttgtttgtttgtgttggtctactggagaataatgcatttacctttcaatgttttgtcctatatggtaatctgattatgattgaaa |
1833461 |
T |
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| Q |
201 |
tgcaattgctgaatctataaac |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
1833462 |
tgcaattgctgaatctataaac |
1833483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 947154 - 947374
Alignment:
| Q |
1 |
tcatcaatataggaattaatgttaatttagtccaaaatctgttaagatcttatgtgtcatctacttgtgtctctgcatgctaggtattaaaattgtattt |
100 |
Q |
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|||||||||||||| |||||||||||||||| |||||||||| || ||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
947154 |
tcatcaatataggagctaatgttaatttagtctaaaatctgtttagctcttatgtgtcatttacttgtgtctctgtatgctaggtattaaaattgtattt |
947253 |
T |
|
| Q |
101 |
gcttcttggctttatttgtttgtttgtgttggtctactggagaataatgcatttacctttcaatattttgtcctatatggtaatctgattatgattgaaa |
200 |
Q |
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| T |
947254 |
gcttcatggctttatttg-ttgtttgtgttggtccgttggagaatgatgcatttacctttcaattttttgtccttgatggtaatctgattatgattgaaa |
947352 |
T |
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| Q |
201 |
tgcaattgctgaatctataaac |
222 |
Q |
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|||| ||||||||||||||||| |
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| T |
947353 |
tgcatttgctgaatctataaac |
947374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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