View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5110_low_100 (Length: 236)
Name: NF5110_low_100
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110_low_100 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 26690048 - 26690267
Alignment:
| Q |
1 |
atgaagttcatgctttggtttacttctggcttaggggtaattgaggccttttgcttctttatgatatggtggttcttatttaagaataagaagcactttg |
100 |
Q |
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| T |
26690048 |
atgaagttcatgctttggtttacttctggcttaggggtaattgaggccttgtgcttctttatgatatggtggttcttatttaagaataagaagcactttg |
26690147 |
T |
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| Q |
101 |
ttagagataatcaaggctacattcttgcaggagcaagatttcgaaaattcacttactcggaactaaaacttgcaacaaaatgttttagtcaagagattgg |
200 |
Q |
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| T |
26690148 |
ttagagataatcaaggctacgttcttgcaggagcaagatttcgaaaattcacttactcggaactaaaacttgcaacaaaatgttttagtcaagagattgg |
26690247 |
T |
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| Q |
201 |
aaatggtgctggaggaactg |
220 |
Q |
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|||||||||||||||||||| |
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| T |
26690248 |
aaatggtgctggaggaactg |
26690267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 13 - 220
Target Start/End: Original strand, 26694218 - 26694428
Alignment:
| Q |
13 |
ctttggtttacttctggcttaggggtaattgaggccttttgcttctttatgatatggtggttcttatttaagaataagaagcactttgttagagataatc |
112 |
Q |
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| T |
26694218 |
ctttggtttgcgtctggcttaggggtaattgaggcgctatgtttttttatgatatggttcttcttatttaagaatagcgagcactttgttatagataatc |
26694317 |
T |
|
| Q |
113 |
aaggctacattcttgcaggagcaa---gatttcgaaaattcacttactcggaactaaaacttgcaacaaaatgttttagtcaagagattggaaatggtgc |
209 |
Q |
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| T |
26694318 |
aaggctacgttcttgcaggagctacaggatttcaaaaattcacttactcggaactaaaacaagcaacaaaatgttttagtcaagagattggaaagggtgc |
26694417 |
T |
|
| Q |
210 |
tggaggaactg |
220 |
Q |
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||||||||||| |
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| T |
26694418 |
tggaggaactg |
26694428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 89 - 220
Target Start/End: Original strand, 26731447 - 26731578
Alignment:
| Q |
89 |
agaagcactttgttagagataatcaaggctacattcttgcaggagcaagatttcgaaaattcacttactcggaactaaaacttgcaacaaaatgttttag |
188 |
Q |
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||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
26731447 |
agaagcactttcttagagataatcaaggctacgttcttgcaggagcaagatttcgaaaattcacttattcggaactaaaacttgcaacaaaatgttttag |
26731546 |
T |
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| Q |
189 |
tcaagagattggaaatggtgctggaggaactg |
220 |
Q |
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| T |
26731547 |
tcaagagattggaagtggtgctggaggaactg |
26731578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 220
Target Start/End: Complemental strand, 26676026 - 26675814
Alignment:
| Q |
11 |
tgctttggtttacttctggcttaggggtaattgaggccttttgcttctttatgatatggtggttcttatttaagaataagaagcactttgttagagataa |
110 |
Q |
| |
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||||||||||| | || |||| || |||||||||| || ||||||||||| |||| |||||||||||||||| |||||||| | || | |||| |
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| T |
26676026 |
tgctttggtttgcgacttgcttgggagtaattgaggtattgtgcttctttattgcggggtgcttcttatttaagaataggaagcactccgctacaaataa |
26675927 |
T |
|
| Q |
111 |
tcaaggctacattcttgcaggagcaa---gatttcgaaaattcacttactcggaactaaaacttgcaacaaaatgttttagtcaagagattggaaatggt |
207 |
Q |
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|||||||||||||||||| ||| ||||||| |||||| |||||| ||| | |||| ||||||||| |||| ||||||||||||||||| ||| |
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| T |
26675926 |
acaaggctacattcttgcaatagcccctggatttcgggaattcagttactctgaattgaaacaagcaacaaaaggtttcagtcaagagattggaaagggt |
26675827 |
T |
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| Q |
208 |
gctggaggaactg |
220 |
Q |
| |
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||||||||||||| |
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| T |
26675826 |
gctggaggaactg |
26675814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 220
Target Start/End: Complemental strand, 26744506 - 26744431
Alignment:
| Q |
145 |
aaattcacttactcggaactaaaacttgcaacaaaatgttttagtcaagagattggaaatggtgctggaggaactg |
220 |
Q |
| |
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|||||||| ||||| |||||||||| ||||||||| ||| ||||||||||||||||| |||||| | ||||||| |
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| T |
26744506 |
aaattcacctactctgaactaaaacatgcaacaaagaatttcagtcaagagattggaaagggtgcttgtggaactg |
26744431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 95
Target Start/End: Complemental strand, 26744655 - 26744562
Alignment:
| Q |
2 |
tgaagttcatgctttggtttacttctggcttaggggtaattgaggccttttgcttctttatgatatggtggttcttatttaagaataagaagca |
95 |
Q |
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|||||||||||||||||||| | |||||| || | ||||||| ||| |||||||||||| ||||||| |||||||| ||||| | |||||| |
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| T |
26744655 |
tgaagttcatgctttggtttgcaagtggcttgggaggaattgagttcttctgcttctttatggtatggtgtttcttattaaagaacaggaagca |
26744562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 220
Target Start/End: Complemental strand, 26751431 - 26751356
Alignment:
| Q |
145 |
aaattcacttactcggaactaaaacttgcaacaaaatgttttagtcaagagattggaaatggtgctggaggaactg |
220 |
Q |
| |
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||||||| |||||| ||| | |||| || |||||| |||||||||||||||| |||| |||||||||||||||| |
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| T |
26751431 |
aaattcagttactctgaattgaaacaagctacaaaaggttttagtcaagagatcggaagaggtgctggaggaactg |
26751356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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