View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5110_low_101 (Length: 236)
Name: NF5110_low_101
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110_low_101 |
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| [»] scaffold0417 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 27426922 - 27426723
Alignment:
| Q |
19 |
atgccggacaataggacacgtgttagaaatcagagggttccacggttccaaattaaatgcaatgaaaatcaaacaaggccatcatcatatctttcatata |
118 |
Q |
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| T |
27426922 |
atgccggacaataggacacgtgttagaaatcagagggttccacggttccaaattaaatgcaatgaaaatcaaacaaggccatcatcatatctttcatata |
27426823 |
T |
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| Q |
119 |
taatttacctgttctacaggaatgccgatggaatgtaaagcagaagcaacttcacgaagtattggggaagcagcatcaaacgctgatgcggaacagtaag |
218 |
Q |
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| T |
27426822 |
taatttacctgttctacaggaatgccgatggaatgtaaagcagaagcaacttcacgaagtattggggaagcagcatcaaatgctgatgcggaacagtaag |
27426723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 122 - 218
Target Start/End: Complemental strand, 27405898 - 27405802
Alignment:
| Q |
122 |
tttacctgttctacaggaatgccgatggaatgtaaagcagaagcaacttcacgaagtattggggaagcagcatcaaacgctgatgcggaacagtaag |
218 |
Q |
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| T |
27405898 |
tttacctgttctacaggaatgcccatggaatgtaaagcagaagcaacttcgcgaagtactggggtagctgcatcaaatgctgatgaggaacagtaag |
27405802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 122 - 218
Target Start/End: Original strand, 27253092 - 27253188
Alignment:
| Q |
122 |
tttacctgttctacaggaatgccgatggaatgtaaagcagaagcaacttcacgaagtattggggaagcagcatcaaacgctgatgcggaacagtaag |
218 |
Q |
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| T |
27253092 |
tttacctgttctactgtaatacccatggaatgcaaagcagaagtaacttcacgaagtattggtgaagcatcatcaaatgatgatgagcaacagtaag |
27253188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 27293836 - 27293912
Alignment:
| Q |
122 |
tttacctgttctacaggaatgccgatggaatgtaaagcagaagcaacttcacgaagtattggggaagcagcatcaaa |
198 |
Q |
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| T |
27293836 |
tttacctgttctactgtaatacccatagaaagcaaagcagaagtaacttcacgaagtattggagaagcatcatcaaa |
27293912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0417 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0417
Description:
Target: scaffold0417; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 122 - 218
Target Start/End: Original strand, 10428 - 10524
Alignment:
| Q |
122 |
tttacctgttctacaggaatgccgatggaatgtaaagcagaagcaacttcacgaagtattggggaagcagcatcaaacgctgatgcggaacagtaag |
218 |
Q |
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| T |
10428 |
tttacctgttctactggaattcccattgaatgtaaagcagaagtaacttcacgaagtattggggaagcaacatcaaatgctgacgaggagcagtaag |
10524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 13356324 - 13356248
Alignment:
| Q |
122 |
tttacctgttctacaggaatgccgatggaatgtaaagcagaagcaacttcacgaagtattggggaagcagcatcaaa |
198 |
Q |
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|||||||||||||| |||||||| || ||||| |||||| ||| ||||||||||||||||||||||||| ||||||| |
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| T |
13356324 |
tttacctgttctactggaatgcccatagaatgcaaagcataagtaacttcacgaagtattggggaagcaacatcaaa |
13356248 |
T |
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