View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5110_low_102 (Length: 235)
Name: NF5110_low_102
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110_low_102 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 45306389 - 45306181
Alignment:
| Q |
18 |
agtagttggtgtaattttccaatatatgaagcagatgttggatggggaaaaccaacatggctcaccactgcggttgttttaagaattattacattgttat |
117 |
Q |
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| T |
45306389 |
agtagttggtgtaattttccaatatatgaagcagattttggatggggaaaaccaacatggctcaccactgcggttgttttaagaattattacattgttat |
45306290 |
T |
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| Q |
118 |
ccttttcttttgttcttaatttcaacctcctcatattcattaattcatttactctaattaca-nnnnnnnatccaacatcaatataaaaatttcttaaaa |
216 |
Q |
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| T |
45306289 |
ccttttcttttgttcttaatttcaacctcctcatattcattaattcatttactctaattacattttttttattcaacatcaatataaaaatttcttaaaa |
45306190 |
T |
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| Q |
217 |
cacaggatt |
225 |
Q |
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||||||||| |
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| T |
45306189 |
cacaggatt |
45306181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 178
Target Start/End: Complemental strand, 45318386 - 45318331
Alignment:
| Q |
123 |
tcttttgttcttaatttcaacctcctcatattcattaattcatttactctaattac |
178 |
Q |
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| T |
45318386 |
tcttttgttcttacttttagcctcttcattttcattaattcatttactctatttac |
45318331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 36621758 - 36621690
Alignment:
| Q |
18 |
agtagttggtgtaattttccaatatatgaagcagatgttggatggggaaaaccaacatggctcaccact |
86 |
Q |
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| T |
36621758 |
agtagttggtgtaggtttccaatgtatgaagcagattttggatggggaaaaccaatatggatcaccact |
36621690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 36626992 - 36626924
Alignment:
| Q |
18 |
agtagttggtgtaattttccaatatatgaagcagatgttggatggggaaaaccaacatggctcaccact |
86 |
Q |
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| T |
36626992 |
agtagttggtgtaggtttccaatgtatgaagcagattttggatggggaaaaccaatatggatcaccact |
36626924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 36632233 - 36632165
Alignment:
| Q |
18 |
agtagttggtgtaattttccaatatatgaagcagatgttggatggggaaaaccaacatggctcaccact |
86 |
Q |
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| T |
36632233 |
agtagttggtgtaggtttccgatgtatgaagcagattttggatggggaaaaccaatatggatcaccact |
36632165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 34329984 - 34330043
Alignment:
| Q |
18 |
agtagttggtgtaattttccaatatatgaagcagatgttggatggggaaaaccaacatgg |
77 |
Q |
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| T |
34329984 |
agtagttggtgtaggtttccaatgtatgaagctgattttgggtggggaaaaccaatatgg |
34330043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 34334080 - 34334130
Alignment:
| Q |
20 |
tagttggtgtaattttccaatatatgaagcagatgttggatggggaaaacc |
70 |
Q |
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| T |
34334080 |
tagttggtgtaagtttccgatgtatgaagctgattttggatggggaaaacc |
34334130 |
T |
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