View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5110_low_105 (Length: 228)
Name: NF5110_low_105
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110_low_105 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 32688409 - 32688635
Alignment:
| Q |
1 |
tgtgaagaagggaacttccaacattggaattatatatcctaaaaatgcagaagtttgcttgctatattcagattggtggtggtcatgaaagtaatagcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
32688409 |
tgtgaagaagggaacttccaacattggaattatatatcctaaaaatgcagaagtttgcttgctatattcagattggtg-tggtcatgaaagtaatagcaa |
32688507 |
T |
|
| Q |
101 |
aacacagtagataatgcttttgtgtgtgggaaaatcctctgggcatcggacaaatagtttatggcagtggccaaatgtaaagtgaggtcgagcatgttgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
32688508 |
aacacagtagataatgcttttgtgtgtgggaaaatcctctgggcatcggacaaatagtttatggtggtggccaaatgtaaagtgaggtcgagcatgttgt |
32688607 |
T |
|
| Q |
201 |
tacaatgactatgaggccttgcatgcct |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
32688608 |
tacaatgactatgaggccttgcatgcct |
32688635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University