View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5110_low_107 (Length: 224)
Name: NF5110_low_107
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110_low_107 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 52284078 - 52284266
Alignment:
| Q |
18 |
ggaagaactcaagactttaaccatgtcttttatggagtctgggttgagattttggggacttaggttatgattattttcaatatggttgagaattaaattg |
117 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
52284078 |
ggaagaactcaagacttaaaccatgtcttttatggagtctgggttgggattttggggatttaggttatgattattttcaatatggttgagaattaaattg |
52284177 |
T |
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| Q |
118 |
gatcttagtatttccttgctctgtagcagtccttattattgttatgcccatttcttgtaattgtaagattgaatcaattttagatccctttg |
209 |
Q |
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| T |
52284178 |
gatcttagtatttccttactctgtagcagtcc---ttattgttatgcccatttcttgtaattgtaagattgaatcaattctagatccctttg |
52284266 |
T |
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Target: chr6 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 17961979 - 17962167
Alignment:
| Q |
18 |
ggaagaactcaagactttaaccatgtcttttatggagtctgggttgagattttggggacttaggttatgattattttcaatatggttgagaattaaattg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||| |||||||||||||||||||||| |
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| T |
17961979 |
ggaagaactcaagactttaaccatgtcttttatggagtctgggttgggattttagggatttaggttatgattattttaaatatggttgagaattaaattg |
17962078 |
T |
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| Q |
118 |
gatcttagtatttccttgctctgtagcagtccttattattgttatgcccatttcttgtaattgtaagattgaatcaattttagatccctttg |
209 |
Q |
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| T |
17962079 |
gatcttagtatttccttactctgtagctgtcc---ttattgttatgcccatttcttgtaattgtaagattgaatcaattttagatccctttg |
17962167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 25027701 - 25027876
Alignment:
| Q |
18 |
ggaagaactcaagactttaaccatgtcttttatggagtctgggttgagattttggggacttaggttatgattattttcaatatggttgagaattaaattg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
25027701 |
ggaagaactcaagactttaaccatgtcttttatggagtctgggttgggattttggggatttaggttatgattattttcaatatggttgagaattaaattg |
25027800 |
T |
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| Q |
118 |
gatcttagtatttccttgctctgtagcagtccttattattgttatgcccatttcttgtaattgtaagattgaatcaatt |
196 |
Q |
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||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25027801 |
gatcttagtatttccttactctgtagcagtcc---ttattgttatgcccatttcttgtaattgtaagattgaatcaatt |
25027876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 46207462 - 46207287
Alignment:
| Q |
18 |
ggaagaactcaagactttaaccatgtcttttatggagtctgggttgagattttggggacttaggttatgattattttcaatatggttgagaattaaattg |
117 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
46207462 |
ggaagaactcaagactttaaccatgtcttttatggagtctgggttgggattttggggatttaggttatgattattttcaatatggttgagaattaaattg |
46207363 |
T |
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| Q |
118 |
gatcttagtatttccttgctctgtagcagtccttattattgttatgcccatttcttgtaattgtaagattgaatcaatt |
196 |
Q |
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||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46207362 |
gatcttagtatttccttactctgtagcagtcct---tattgttatgcccatttcttgtaattgtaagattgaatcaatt |
46207287 |
T |
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