View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5110_low_11 (Length: 501)
Name: NF5110_low_11
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110_low_11 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 12 - 483
Target Start/End: Complemental strand, 3729879 - 3729405
Alignment:
| Q |
12 |
atgaattaagttaattgaattcatacatgtatgatatctttttctttttatagtttgtataaataatataacctct--tattttggtaaatgaataatga |
109 |
Q |
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| T |
3729879 |
atgaattaagttaattgaattcatacatgtatgatatcgttttctttttatagtttgtataaataatataacctctcttattttggcaaatgaataataa |
3729780 |
T |
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| Q |
110 |
tgaagcttcatcgttcatgttttttccggtttagacgatgtaagtctgcaataggctactaaaaagtatttagcataaacaagaaaaatgtatttgttct |
209 |
Q |
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| T |
3729779 |
tgaagcttcatcgttcatgttttttccggtttagacgatgtaagtctgcaataggctactaaaaagtatttagcataaacaagaaaaatgtatttgttct |
3729680 |
T |
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| Q |
210 |
accaaattaaaccctcgaaaacatgtaccagggaagacacatggtgtactacatggaggataannnnnnnnnnagcataacaccaatattaaaaaattat |
309 |
Q |
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| T |
3729679 |
accaaattaaaccctcgaaaacatgtgccagggaagacacatggtgtactacatggaggataattttttttttagcataacaccaatattaaaaaattat |
3729580 |
T |
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| Q |
310 |
aggatgaaagttagttgtgaagtcattcaaaaggtgtgggaatggaagcatgacttaata--gtgagagttcgtttcaacaatgtgtcggtgtttaaact |
407 |
Q |
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| T |
3729579 |
aggatgaaagttagttgtgaagtcattcaaaaggtgagggaatggaagcatgacttaatagtgtgagagtt-gtttcaacaatgtgtcggtgtttaaact |
3729481 |
T |
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| Q |
408 |
cggctagtccgatgtgctccaggtgtatggtggagagatgaaataggatatttagagctcgtttgaaatagttttt |
483 |
Q |
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| T |
3729480 |
cggctagtccgatgtgctccaggtgtatggtggagagatgaaataggatatttagagcctgtttgaaatagttttt |
3729405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 162
Target Start/End: Complemental strand, 34821568 - 34821494
Alignment:
| Q |
88 |
tattttggtaaatgaataatgatgaagcttcatcgttcatgttttttccggtttagacgatgtaagtctgcaata |
162 |
Q |
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| T |
34821568 |
tattttggtaaaggaacaacgaagaagtttcatcgttgatgttgtttccagtgtagacaatataagtctgcaata |
34821494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 347 - 459
Target Start/End: Complemental strand, 92338 - 92224
Alignment:
| Q |
347 |
gggaatggaagcatgacttaata--gtgagagttcgtttcaacaatgtgtcggtgtttaaactcggctagtccgatgtgctc-caggtgtatggtggaga |
443 |
Q |
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| T |
92338 |
gggaatggaagcatgacttaatattgtgagagct-gtttcaacaatgtgtcggtgtttacgctcggctagtccgatgtgctctggggtgtatggtggaga |
92240 |
T |
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| Q |
444 |
gatgaaataggatatt |
459 |
Q |
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| T |
92239 |
gatgaaatgggatatt |
92224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 347 - 459
Target Start/End: Complemental strand, 24492973 - 24492859
Alignment:
| Q |
347 |
gggaatggaagcatgacttaatagtgagagttc-gtttcaacaatgtgtcggtgtttaaactcggctagtccgatgtgctc-caggtgtatggtggagag |
444 |
Q |
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|||||||||||||||||||||||||| ||| | |||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||| ||| |
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| T |
24492973 |
gggaatggaagcatgacttaatagtgtgagagctgtttcaacgatgtgtcggtgtttatgctcggctagtccgatgtgctctggggtgtatggtggggag |
24492874 |
T |
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| Q |
445 |
atgaaataggatatt |
459 |
Q |
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| T |
24492873 |
atgaaataggatatt |
24492859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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