View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5110_low_114 (Length: 209)
Name: NF5110_low_114
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110_low_114 |
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Alignment Details
Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 100 - 191
Target Start/End: Original strand, 2885997 - 2886088
Alignment:
| Q |
100 |
tatagtcctacactcctagctctttacaagaaaatgtatcgtccaagccatgattgcaattttcaccataatattattttaagtgatttggt |
191 |
Q |
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| T |
2885997 |
tatagtcctacactcctagctctttacaagaaaatgtatcgtccaagccatgatagcaattttcaccataatattattttaagtgatttggt |
2886088 |
T |
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Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 2884621 - 2884703
Alignment:
| Q |
20 |
tactacaacgactgagatttttatcaaacaatacagttatttctatcttttcaaataatccaaacagatgtcatccatattat |
102 |
Q |
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| T |
2884621 |
tactgcaatgactgtggtttttatcgaacaatacagttatttctatcttttcaaataacttaaacagatgtcatccatattat |
2884703 |
T |
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