View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5110_low_14 (Length: 466)
Name: NF5110_low_14
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110_low_14 |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 18 - 461
Target Start/End: Original strand, 18079313 - 18079759
Alignment:
| Q |
18 |
agccgaagcaaaaaataaacatgcggaatccaaaggtgacatcacatgatctctttgctcattatatttcgattatgtgtttgtgtgcgcgcgcatgtat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
18079313 |
agccgaagcaaaaaataaacatgcggaatccaaaggtgacatcacatgatctctttgctcattatatttcaattatgtgtttgtgtgcgcgcgcatgtat |
18079412 |
T |
|
| Q |
118 |
atatgtttgaatttggtattacatgtgtttacgtaattgaggttctgtttctcccctttttagattaactattgatgtgatttgttgtattctatatttg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18079413 |
atatgtttgaatttggtattacatgtgtttacgtaattgaggttctgtttctcccctttttagattaactattgatgtgatttgttgtattctatatttg |
18079512 |
T |
|
| Q |
218 |
aaatgtgataatctggttcactacaggcaattaaaatgaagacaaaaaccaacatcaaccatgaggtcgagctctccaagtatatgctgaaagacttctt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18079513 |
aaatgtgataatctggttcactacaggcaattaaaatgaagacaaaaaccaacatcaaccatgaggtcgagctctccaagtatatgctgaaagacttctt |
18079612 |
T |
|
| Q |
318 |
ccatatttaagatgatcggatgaagaacaaatggtcgagaaggatatagcagcaaagagacaatgtactttttcgtcaaaatgtctcacttcttgctgtc |
417 |
Q |
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|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
18079613 |
ccatatttaagacgattggatgaagaacaaatggtcgagaaggatatagcagcaaagagacaatgtactttttcgtccaaatgtctcacttcttgctgtc |
18079712 |
T |
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| Q |
418 |
cat---ttcttgcttttttctctatggttttattaatctgtgctgct |
461 |
Q |
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||| ||||||||||||||||||| ||||||||||| |||| |||| |
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| T |
18079713 |
catttcttcttgcttttttctctatcgttttattaatgtgtgttgct |
18079759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 181; Significance: 1e-97; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 179 - 461
Target Start/End: Original strand, 51479832 - 51480118
Alignment:
| Q |
179 |
agattaactattgatgtgatttgttgtattctatatttgaaatgtgataatctggttcactacaggcaattaaaatgaagacaaaaaccaacatcaacca |
278 |
Q |
| |
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|||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||| ||||||| ||||||||| |||||| |
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| T |
51479832 |
agattaactattcatgtgatttgttgtattctacatttgaaatgtgatcatctggttcactacaggaaattaaaacgaagacagaaaccaacaacaacca |
51479931 |
T |
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| Q |
279 |
tgaggtcgagctctccaagtatatgctgaaag-acttcttccatatttaagatgatcggatgaagaacaaatggtcgagaaggatatagcagcaaagaga |
377 |
Q |
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|||| |||||||||||||||||||| |||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
51479932 |
tgagttcgagctctccaagtatatggtgaaagaacttcttccatatttaagacgattggatgaagaacaaatggtcgagaaggagatagaagcaaagaga |
51480031 |
T |
|
| Q |
378 |
caatgtactttttcgtcaaaatgtctcacttcttgctgtccat---ttcttgcttttttctctatggttttattaatctgtgctgct |
461 |
Q |
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||| ||||||||||||| ||| |||||| |||||||||||||| ||||||||||||||||||| |||||||||| |||| |||| |
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| T |
51480032 |
caaggtactttttcgtccaaaagtctcatttcttgctgtccatttcttcttgcttttttctctatccttttattaatgtgtgttgct |
51480118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 166 - 413
Target Start/End: Complemental strand, 30207522 - 30207275
Alignment:
| Q |
166 |
ttctcccctttttagattaactattgatgtgatttgttgtattctatatttgaaatgtgataatctggttcactacaggcaattaaaatgaagacaaaaa |
265 |
Q |
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|||||||| || ||||| ||||||| |||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||| ||| | ||| |
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| T |
30207522 |
ttctcccccttatagatcaactattcttgtgatttgttgcattctacatttgaaatgtgataatctggtttactacaggcaattaaagataagcgagaaa |
30207423 |
T |
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| Q |
266 |
ccaacatcaaccatgaggtcgagctctccaagtatatgctgaaag-acttcttccatatttaagatgatcggatgaagaacaaatggtcgagaaggatat |
364 |
Q |
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|| ||| |||||||||| |||||||||||||||||| ||||| ||||||||| ||||||||| || ||||||||||||||||| ||||||||| || |
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| T |
30207422 |
cctacaatgaccatgaggttgagctctccaagtatatgttgaaaatacttcttccgtatttaagacaattggatgaagaacaaatggccgagaaggagat |
30207323 |
T |
|
| Q |
365 |
agcagcaaagagacaatgtactttttcgtcaaaatgtctcacttcttgc |
413 |
Q |
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|| ||||||||||||| ||| |||||| || || |||||||||||||| |
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| T |
30207322 |
agaagcaaagagacaaggta-tttttcctccaagagtctcacttcttgc |
30207275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 193 - 425
Target Start/End: Original strand, 51496884 - 51497118
Alignment:
| Q |
193 |
tgtgatttgttgtattctatatttgaaatgtg-ataatctggttcactacaggcaattaaaatgaagacaaaaaccaacatcaaccatgaggtcgagctc |
291 |
Q |
| |
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|||||||| |||||||||| |||| ||||| | ||||||| | ||||| |||| |||||||| |||||| ||||||||| || ||||||||| |||| | |
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| T |
51496884 |
tgtgattttttgtattctacatttaaaatggggataatcttggtcactgcaggaaattaaaaagaagacggaaaccaacaacagccatgaggttgagccc |
51496983 |
T |
|
| Q |
292 |
tccaagtatatgctgaaag-acttcttccatatttaagatgatcggatgaagaacaaatggtcgagaaggatatagcagcaaagagacaatgtacttttt |
390 |
Q |
| |
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||||| ||||||||||||| |||| ||||||||||||| | | ||||||||| ||||||| |||||||| |||| |||||||| |||| ||| |||| |
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| T |
51496984 |
tccaaatatatgctgaaagtactttttccatatttaagtcgtttggatgaagagcaaatggctgagaaggagatagaagcaaagatacaaggtatatttt |
51497083 |
T |
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| Q |
391 |
cgtcaaaatgtctcacttcttgctgtccatttctt |
425 |
Q |
| |
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| || ||| |||| ||||||||| |||||||||| |
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| T |
51497084 |
cctccaaaagtcttacttcttgcaatccatttctt |
51497118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 22 - 167
Target Start/End: Original strand, 51479262 - 51479401
Alignment:
| Q |
22 |
gaagcaaaaaataaacatgcggaatccaaaggtgacatcacatgatctctttgctcattatatttcgattatgtgtttgtgtgcgcgcgcatgtatatat |
121 |
Q |
| |
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|||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||| | ||| | ||||||| |
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| T |
51479262 |
gaagcaaaaaattaacaaacggaatcctaaggtgacatcacatgatctctttgctcattatatttcaattctgtgtgtatgt------atacatatatat |
51479355 |
T |
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| Q |
122 |
gtttgaatttggtattacatgtgtttacgtaattgaggttctgttt |
167 |
Q |
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|||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
51479356 |
gtttgaatttggcgttacatgtgtttacgtaattgcggttctgttt |
51479401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 378
Target Start/End: Original strand, 51455436 - 51455535
Alignment:
| Q |
280 |
gaggtcgagctctccaagtatatgctgaaag-acttcttccatatttaagatgatcggatgaagaacaaatggtcgagaaggatatagcagcaaagagac |
378 |
Q |
| |
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||||| ||| |||| |||||| ||||||||| |||||||||| |||||||| | | ||||| |||||||||| | |||||||| | || ||| ||||||| |
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| T |
51455436 |
gaggttgagttctctaagtatctgctgaaaggacttcttccacatttaagacggttggatgcagaacaaatgattgagaaggaaagagaagccaagagac |
51455535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 391
Target Start/End: Original strand, 27395957 - 27396064
Alignment:
| Q |
285 |
cgagctctccaagtatatgctgaaaga-cttcttccatatttaagatgatcggatgaagaacaaatggtcgagaaggatatagcagcaaagagacaatgt |
383 |
Q |
| |
|
|||| |||||||||||||||| |||| ||||||||| |||||| | ||| |||| |||||||||||| ||||||||| |||| ||| ||| |||| || |
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| T |
27395957 |
cgagttctccaagtatatgctcaaagctcttcttccacatttaatacgattggatcaagaacaaatggccgagaaggagatagaagccaagttacaaggt |
27396056 |
T |
|
| Q |
384 |
actttttc |
391 |
Q |
| |
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| |||||| |
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| T |
27396057 |
attttttc |
27396064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 391
Target Start/End: Complemental strand, 138043 - 137941
Alignment:
| Q |
290 |
tctccaagtatatgctgaaaga-cttcttccatatttaagatgatcggatgaagaacaaatggtcgagaaggatatagcagcaaagagacaatgtacttt |
388 |
Q |
| |
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|||||||||||||||||||| | |||||||||||||||||| || ||| ||||||||||| |||||||| |||| ||| |||| |||| ||| ||| |
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| T |
138043 |
tctccaagtatatgctgaaataccttcttccatatttaagagaattagatctagaacaaatggctgagaaggagatagaagccaagatacaaggtatttt |
137944 |
T |
|
| Q |
389 |
ttc |
391 |
Q |
| |
|
||| |
|
|
| T |
137943 |
ttc |
137941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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