View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5110_low_16 (Length: 463)
Name: NF5110_low_16
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 12 - 444
Target Start/End: Original strand, 43288699 - 43289119
Alignment:
| Q |
12 |
atgaacacatgctcatttgtcgtctaacaaacattatactatgatttacgcgacagaattagaaaaattgaacaattactcaaaatagcactccacctca |
111 |
Q |
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| T |
43288699 |
atgaacacatgttcatttgttgtctaacaaacatcatactaagatttacgcgacagaattagaaaaattgaacaattactcaaaatagcactccacctca |
43288798 |
T |
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| Q |
112 |
aactaaa-tttggtgataagaggttaagggagtctactaaacctgtgtcagaattttgagcacatgatttggtagtaaaagtttaacgttgaatccactt |
210 |
Q |
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| T |
43288799 |
aactaaaatttggtgataagaggttaagggagtctactaaacttgtgtccgaattttgagcacatgatttggtagtaaaagtttaacgttgaatccactt |
43288898 |
T |
|
| Q |
211 |
gtgtgcccaatgtaataacaatacacaccacactttattcattatccaacattagttagtttaactaaaagtaatcagttcttttactgaaagtcttccg |
310 |
Q |
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| T |
43288899 |
gtgtgcccaatgtaataa--------accacactttcttcattatccaacattagttagtttaactaaaagtaatcagttcttttactgaaagtcttccg |
43288990 |
T |
|
| Q |
311 |
aactcggatcatgacccaactatattaattagcccagcttccaaaaatacggtaggccattgattgaaaaaaagtttattagctgtnnnnnnnntaaaac |
410 |
Q |
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| T |
43288991 |
aactcggatcatgacccaactatattaattagcccagcttccaaaaatacggtaggccattgattgaaaaaaagtttattagctgtaaaaaaaataaaac |
43289090 |
T |
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| Q |
411 |
agtacaccaaagaaagaatctgcttttaaccttt |
444 |
Q |
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| T |
43289091 |
agtacac-----aaagaatctgcttttaaccttt |
43289119 |
T |
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