View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5110_low_19 (Length: 458)
Name: NF5110_low_19
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110_low_19 |
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| [»] scaffold0188 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 15 - 442
Target Start/End: Original strand, 32932580 - 32933013
Alignment:
| Q |
15 |
tatttaagtaagaatttgaactcgggttttcccaaacaattcgtctttaactgaaactcattaaggagttcaatcacttggttggttaaatcgaaatagc |
114 |
Q |
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| T |
32932580 |
tatttaagtaagaatttgaactcgggttttcccaaacaatttgtctttaactgaaactcattaaggagttcaatcacttggttggttaaattgaaatagc |
32932679 |
T |
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| Q |
115 |
tattaaatagtgtaatgtatgtattaat---ttctacagcattgtcatggatttcttcctaaatggctactttgttaatactgtgttttccttgacannn |
211 |
Q |
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| T |
32932680 |
tattaaatagtgtaatgtatgtattaataatttctacagcattgtcatggatttcttcctaaatggctactttgttaatactgtgttttccttgaaatta |
32932779 |
T |
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| Q |
212 |
nnnnatgccacagtgagacatacagatattttgatcttccattttgttcaccaggttagtttgatgatattcattatcacttctcacccaaattttctat |
311 |
Q |
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| T |
32932780 |
ttttatgccacagtgagacatacagatattttgatcttccattttgttcaccaggttagtttgatgatattcattatcacttctcacccaaattttctat |
32932879 |
T |
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| Q |
312 |
tactgtctttgtattaat---taattaaatataccttatagttccaaaatttattggctgcagaaaatgtagaagaaaagaaagaagatcttggtgaagt |
408 |
Q |
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| T |
32932880 |
tactgtctttgtattaattaataattaaatataccttatagttccaaaatttattggctgcagaaaatgtagaagaaaagaaagaagatcttggtgaagt |
32932979 |
T |
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| Q |
409 |
tttgaacggtgatagattagttgttgctccttac |
442 |
Q |
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| T |
32932980 |
tttgaacggtgatagattagttgttgctccttac |
32933013 |
T |
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Back To:
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Target: scaffold0188 (Bit Score: 173; Significance: 7e-93; HSPs: 1)
Name: scaffold0188
Description:
Target: scaffold0188; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 28 - 405
Target Start/End: Original strand, 16346 - 16722
Alignment:
| Q |
28 |
atttgaactcgggttttcccaaacaattcgtctttaactgaaactcattaag-----gagttcaatcacttggttggttaaatcgaaatagctattaaat |
122 |
Q |
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| T |
16346 |
atttgacctcaggttatcccgaacaattcatctttaatttaaattcattaaacatttgagttcaatcacttgattggttaaatctaaatggctaataaat |
16445 |
T |
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| Q |
123 |
agtgtaatgtatgtattaatttctacagcattgtcatggatttcttcctaaatggctactttgttaatactgtgttttccttgacannnnnnnat-gcca |
221 |
Q |
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| T |
16446 |
agtgtgatgcatgtattaaattctaaagcattatcaagaatttcttcctaaatggctactttgttaaaactgtgttttccttgacattttttttgcgcca |
16545 |
T |
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| Q |
222 |
cagtgagacatacagatattttgatcttccattttgttcaccaggttagtttgatgatattcattatcacttctcacccaaattttctattactgtcttt |
321 |
Q |
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| T |
16546 |
cagtgagacatacag-------gatcttcccttttgctcaccaggttagtttcatgataatcattatcacttctcacccaaactttctattactgtctta |
16638 |
T |
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| Q |
322 |
gtattaattaattaaatataccttatagttccaaaatttattggctgcagaaaatgtagaagaaaagaaagaagatcttggtga |
405 |
Q |
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||||||||||||||| || | ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
16639 |
gtattaattaattaactacatcttatagttccaaaatttattggctacagaaaatgtggaagaaaagaaagaagatcttggtga |
16722 |
T |
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