View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5110_low_2 (Length: 763)

Name: NF5110_low_2
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5110_low_2
NF5110_low_2
[»] chr8 (12 HSPs)
chr8 (269-747)||(5201184-5201667)
chr8 (6-230)||(5194515-5194739)
chr8 (58-198)||(5199360-5199500)
chr8 (106-228)||(5184234-5184355)
chr8 (96-201)||(5197761-5197864)
chr8 (96-212)||(5175669-5175785)
chr8 (127-229)||(6233281-6233383)
chr8 (6-93)||(5177220-5177307)
chr8 (280-324)||(11678299-11678343)
chr8 (13-44)||(5199327-5199358)
chr8 (96-195)||(5204845-5204939)
chr8 (96-133)||(1796684-1796721)
[»] chr6 (1 HSPs)
chr6 (283-747)||(2030908-2031379)
[»] chr7 (2 HSPs)
chr7 (96-228)||(5178138-5178271)
chr7 (281-459)||(39844906-39845084)
[»] chr2 (2 HSPs)
chr2 (293-503)||(36251044-36251254)
chr2 (293-351)||(38908123-38908181)
[»] chr3 (5 HSPs)
chr3 (304-351)||(22350417-22350464)
chr3 (304-351)||(47327729-47327776)
chr3 (370-459)||(1547630-1547719)
chr3 (546-619)||(22350144-22350217)
chr3 (627-664)||(42774146-42774183)
[»] chr1 (1 HSPs)
chr1 (293-346)||(38548141-38548194)


Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 269 - 747
Target Start/End: Original strand, 5201184 - 5201667
Alignment:
Q  269 ttaaaaataaactcatttctcaccttccaaatgacccaaattgcggcttgccaaatcattctcaaaccgttacggattttcttattaatattacccatca 368  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||     
T  5201184 ttaaaaataaacccatttctcgccttccaaatgacccaaattgcggcttgccaaatcattctcaaacccttacggattttcttattaatattacccatcg 5201283  T
Q  369 cccaacattcccaatggacgaataagttgggtggcattacaaaattcgaatccaaccacaccatcaagttaagccaaatatttctagccatatcgcattg 468  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  5201284 cccaacattcccaatggacgaataagttgggtggcattacaaaattcaaatccaaccacaccatcaagttaagccaaatatttctagccatatcgcaatg 5201383  T
Q  469 gaggaaaatatgcgaagtagatttgggaac-----gacaccaaacacaattatggctaacatccatagataaacaactccttatctccaaattcacccta 563  Q
    ||||||||||||||||||||||| ||||||      |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5201384 gaggaaaatatgcgaagtagattcgggaaccgtcgcacaccaaacacaattatggctaacatccataggtaaacaactccttatctccaaattcacccta 5201483  T
Q  564 tttggaatccggtctagcaaggccttccacacaaaagtgttcaccttggttggaaccccgaatttccaaatttgacggaacaccctcctttccccttccg 663  Q
    |||| |||  |||||||||||| |||||||||||||| | ||| |||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||    
T  5201484 tttgaaatttggtctagcaaggtcttccacacaaaagcgctcatcttggttggaaccccggattttcaaatttgacgaaacaccctcctttccccttccg 5201583  T
Q  664 gcctaatctcctctcctatctctctcatatccaacctagcagacaaggacttcactgaaaaatttctatcatcctccaacttcc 747  Q
    ||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||| ||||||| ||||||||||||||||||||    
T  5201584 gcctaatctcctctcatatctctctcatatccaacttagcatacaaggacttcaccgaaaaatgtctatcatcctccaacttcc 5201667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 6 - 230
Target Start/End: Complemental strand, 5194739 - 5194515
Alignment:
Q  6 agaagcatagggtaattaatataaacatagattgcaatggtgtgggttactgccttcaaacagatgcgacatcagaaaaggaagaaactgatcaatcttt 105  Q
    |||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||| |||||||||||||||||| | ||||||||    
T  5194739 agaatcatagggtaattaatataaacatagattgcaatggtgcgagttactgccttcaaacagaggcgacgtcagaaaaggaagaaactcaccaatcttt 5194640  T
Q  106 tgtttactcaactttgtcctgtttttagcaattcattcttactcaaagaactgatccaaacacattataagcataaatgaaatgtgtttgacataaaagg 205  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||| | ||| |||||||||| |||||||||||||||||||||||| ||||||||    
T  5194639 tgtttactcaactttgtcctgtttttagcaaataattcttactcaaagacccgattcaaacacattttaagcataaatgaaatgtgtttgatataaaagg 5194540  T
Q  206 aaaacatatatgacaagctttttat 230  Q
    |||| ||| ||||||| | ||||||    
T  5194539 aaaatatagatgacaaaccttttat 5194515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 58 - 198
Target Start/End: Original strand, 5199360 - 5199500
Alignment:
Q  58 ccttcaaacagatgcgacatcagaaaaggaagaaactgatcaatcttttgtttactcaactttgtcctgtttttagcaattcattcttactcaaagaact 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5199360 ccttcaaacagatgcgacatcagaaaaggaagaaactgatcaatcttttgtttactcaactttgtcctgtttttagcaattcattcttactcaaagaact 5199459  T
Q  158 gatccaaacacattataagcataaatgaaatgtgtttgaca 198  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  5199460 gatccaaacacattataagcataaatgaaatgtgtatgaca 5199500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 106 - 228
Target Start/End: Complemental strand, 5184355 - 5184234
Alignment:
Q  106 tgtttactcaactttgtcctgtttttagcaattcattcttactcaaagaactgatccaaacacattataagcataaatgaaatgtgtttgacataaaagg 205  Q
    ||||| ||||| | ||||||||||||||||||||||||||||||||||||| ||||  |||||||| ||| |||||||||||||||||||||||| ||||    
T  5184355 tgtttcctcaattctgtcctgtttttagcaattcattcttactcaaagaacagatcgtaacacattttaaccataaatgaaatgtgtttgacatataagg 5184256  T
Q  206 aaaacatatatgacaagcttttt 228  Q
    |||| | | ||||||||||||||    
T  5184255 aaaa-acagatgacaagcttttt 5184234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 96 - 201
Target Start/End: Original strand, 5197761 - 5197864
Alignment:
Q  96 atcaatcttttgtttactcaactttgtcctgtttttagcaattcattcttactcaaagaactgatccaaacacattataagcataaatgaaatgtgtttg 195  Q
    ||||||||| ||||||||||| ||||||||| ||||| ||||||||||||||||  ||||| |||||||||||||| |||||||||||| ||||||||||    
T  5197761 atcaatcttatgtttactcaattttgtcctgattttaccaattcattcttactc--agaacagatccaaacacattttaagcataaatgtaatgtgtttg 5197858  T
Q  196 acataa 201  Q
    ||||||    
T  5197859 acataa 5197864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 96 - 212
Target Start/End: Complemental strand, 5175785 - 5175669
Alignment:
Q  96 atcaatcttttgtttactcaactttgtcctgtttttagcaattcattcttactcaaagaactgatccaaacacattataagcataaatgaaatgtgtttg 195  Q
    ||||||||| ||||| ||||| ||||||| |||||||| |||||||| ||||||||||||| ||||  |||||||| ||| ||||||||||||||||||     
T  5175785 atcaatcttctgtttgctcaattttgtccagtttttagaaattcattattactcaaagaacagatcgtaacacattttaaccataaatgaaatgtgtttc 5175686  T
Q  196 acataaaaggaaaacat 212  Q
     ||||||||||||||||    
T  5175685 gcataaaaggaaaacat 5175669  T

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Target: chr8; HSP #7
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 127 - 229
Target Start/End: Complemental strand, 6233383 - 6233281
Alignment:
Q  127 tttttagcaattcattcttactcaaagaactgatccaaacacattataagcataaatgaaatgtgtttgacataaaaggaaaacatatatgacaagcttt 226  Q
    ||||||| ||||| ||| |||||||||||| ||||| |||||||| |||||||||| || | |||||| |||||||||||||||||  |||||||| |||    
T  6233383 tttttaggaattctttcatactcaaagaacggatcctaacacattttaagcataaaagagacgtgtttaacataaaaggaaaacatcgatgacaagtttt 6233284  T
Q  227 tta 229  Q
    |||    
T  6233283 tta 6233281  T

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Target: chr8; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 6 - 93
Target Start/End: Complemental strand, 5177307 - 5177220
Alignment:
Q  6 agaagcatagggtaattaatataaacatagattgcaatggtgtgggttactgccttcaaacagatgcgacatcagaaaaggaagaaac 93  Q
    |||| ||||||||||||||||||| |||| |||||||||| ||| |||||||||| |||||||| | ||  |||||||||||||||||    
T  5177307 agaatcatagggtaattaatataagcataaattgcaatggcgtgagttactgcctccaaacagaggtgatgtcagaaaaggaagaaac 5177220  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 280 - 324
Target Start/End: Complemental strand, 11678343 - 11678299
Alignment:
Q  280 ctcatttctcaccttccaaatgacccaaattgcggcttgccaaat 324  Q
    ||||||||||||||||||||| ||||||||| |||| ||||||||    
T  11678343 ctcatttctcaccttccaaatcacccaaattacggcatgccaaat 11678299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 44
Target Start/End: Original strand, 5199327 - 5199358
Alignment:
Q  13 tagggtaattaatataaacatagattgcaatg 44  Q
    ||||||||||||||||||||||||||||||||    
T  5199327 tagggtaattaatataaacatagattgcaatg 5199358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 195
Target Start/End: Complemental strand, 5204939 - 5204845
Alignment:
Q  96 atcaatcttttgtttactcaactttgtcctgtttttagcaattcattcttactcaaagaactgatccaaacacattataagcataaatgaaatgtgtttg 195  Q
    |||| |||||||||||||||| |||||||  ||||||| ||||| |||||||||| ||    ||||| ||||||||  || |||||||| ||||||||||    
T  5204939 atcattcttttgtttactcaa-tttgtccaatttttaggaattctttcttactcagag----gatcctaacacatttcaaacataaatgcaatgtgtttg 5204845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 133
Target Start/End: Original strand, 1796684 - 1796721
Alignment:
Q  96 atcaatcttttgtttactcaactttgtcctgtttttag 133  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  1796684 atcaatcttttgtttactcaattttgtactgtttttag 1796721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 167; Significance: 5e-89; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 283 - 747
Target Start/End: Original strand, 2030908 - 2031379
Alignment:
Q  283 atttctcaccttccaaatgacccaaattgcggcttgccaaatcattctcaaaccgttacggattttcttattaatattacccatcacccaacattcccaa 382  Q
    ||||||| |||||||||| |||||||| ||  |||||||||||||||||||||| || ||||| |||||||||| |  ||||  | ||||||| ||||||    
T  2030908 atttctcgccttccaaatcacccaaatagcaacttgccaaatcattctcaaacccttccggatcttcttattaagagcaccccccgcccaacactcccaa 2031007  T
Q  383 tggacgaataagttgggtggcattacaaaattcgaatccaaccacaccatcaagtta---agccaaatatttctagccatatcgcattggaggaaaatat 479  Q
    ||||  ||||| ||||||||||||||||||||| |||||||||||  |||||| |||   || ||||||||||| |||||||| || |||||||||| ||    
T  2031008 tggataaataaattgggtggcattacaaaattcaaatccaaccacttcatcaaattattaagtcaaatatttcttgccatatcacaatggaggaaaagat 2031107  T
Q  480 gcgaagtagatttgggaacga-----caccaaacacaattatggctaacatccatagataaacaactccttatctccaaattcaccctatttggaatccg 574  Q
    | ||||| |||| ||| |  |     ||||||||| | | ||| ||||||||| | | ||||||||| ||| ||||||||||||||| ||||||||||||    
T  2031108 gtgaagtggattcgggtatcatcacacaccaaaca-attcatgactaacatccgttggtaaacaacttcttttctccaaattcacccgatttggaatccg 2031206  T
Q  575 gtctagcaaggccttccacacaaaagtgttcaccttggttggaaccccgaatttccaaatttgacggaacaccctcctttccccttccggcctaatctcc 674  Q
    |||||| |  |||||||||| |||||   ||||||| |||||||||||  | |||||||||||||| ||||| |||||||||||||||||||||||||||    
T  2031207 gtctagaagagccttccacataaaagcactcaccttagttggaaccccagacttccaaatttgacgaaacactctcctttccccttccggcctaatctcc 2031306  T
Q  675 tctcctatctctctcatatccaacctagcagacaaggacttcactgaaaaatttctatcatcctccaacttcc 747  Q
    ||||||||||| ||| |||||||| | | | ||||||||||||| |||||  | ||||| |||||||||||||    
T  2031307 tctcctatctccctcctatccaactttgaatacaaggacttcaccgaaaaggtcctatcctcctccaacttcc 2031379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 4e-43; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 96 - 228
Target Start/End: Complemental strand, 5178271 - 5178138
Alignment:
Q  96 atcaatcttttgtttactcaactttgtcctgtttttagcaatt-cattcttactcaaagaactgatccaaacacattataagcataaatgaaatgtgttt 194  Q
    |||||||||| ||||| |||| ||||||||||||||| ||||| ||||||||| |||| ||| |||||||||||||| ||||||||||||||||||||||    
T  5178271 atcaatctttcgtttattcaattttgtcctgtttttaacaatttcattcttacgcaaataacagatccaaacacattttaagcataaatgaaatgtgttt 5178172  T
Q  195 gacataaaaggaaaacatatatgacaagcttttt 228  Q
    ||||||||||||||||||| ||||||||||||||    
T  5178171 gacataaaaggaaaacatagatgacaagcttttt 5178138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 281 - 459
Target Start/End: Complemental strand, 39845084 - 39844906
Alignment:
Q  281 tcatttctcaccttccaaatgacccaaattgcggcttgccaaatcattctcaaaccgttacggattttcttattaatattacccatcac-ccaacattcc 379  Q
    ||||||||| |||||||||| ||||||||| |  | | ||| ||||| | ||| || || || |||||||||||||||   |||  ||| ||||||||||    
T  39845084 tcatttctcgccttccaaatcacccaaattaccacctcccatatcatacgcaatcccttccgaattttcttattaatagatcccc-cactccaacattcc 39844986  T
Q  380 caatggacgaataagttgggtggcattacaaaattcgaatccaaccacaccatcaagttaagccaaatatttctagccat 459  Q
    ||||| |  | ||| || |||||||||||||||||| |||| ||||||| |||||  || | ||||| ||| ||||||||    
T  39844985 caatgaataattaaattcggtggcattacaaaattcaaatctaaccacaacatcacattcaaccaaacattcctagccat 39844906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 293 - 503
Target Start/End: Complemental strand, 36251254 - 36251044
Alignment:
Q  293 ttccaaatgacccaaattgcggcttgccaaatcattctcaaaccgttacggattttcttattaatattacccatcacccaacattcccaatggacgaata 392  Q
    |||||||| |||||||||  |||||||||||||||   ||| |  |  || | ||| ||||||| || ||||  ||||||||| |||||| ||||  | |    
T  36251254 ttccaaataacccaaattatggcttgccaaatcatctgcaatctctcccgaacttttttattaaaatgaccccccacccaacactcccaaaggacataca 36251155  T
Q  393 agttgggtggcattacaaaattcgaatccaaccacaccatcaagttaagccaaatatttctagccatatcgcattggaggaaaatatgcgaagtagattt 492  Q
    | || |||||||||||||||||| |||| ||||||| ||| ||||| | |||||||||  | |||||||| ||  | || |||| |||||||| |||||     
T  36251154 aatttggtggcattacaaaattcaaatctaaccacaacattaagtttaaccaaatattcttcgccatatcacaaggaagaaaaagatgcgaagaagattc 36251055  T
Q  493 gggaacgacac 503  Q
    |||| ||||||    
T  36251054 gggagcgacac 36251044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 293 - 351
Target Start/End: Complemental strand, 38908181 - 38908123
Alignment:
Q  293 ttccaaatgacccaaattgcggcttgccaaatcattctcaaaccgttacggattttctt 351  Q
    |||||||| |||||||| || ||||||| |||||||||||| || || |||||||||||    
T  38908181 ttccaaatcacccaaatcgctgcttgcctaatcattctcaaccccttccggattttctt 38908123  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 304 - 351
Target Start/End: Complemental strand, 22350464 - 22350417
Alignment:
Q  304 ccaaattgcggcttgccaaatcattctcaaaccgttacggattttctt 351  Q
    ||||||||| |||||||||||||||||||| || || |||||||||||    
T  22350464 ccaaattgccgcttgccaaatcattctcaaccccttccggattttctt 22350417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 304 - 351
Target Start/End: Complemental strand, 47327776 - 47327729
Alignment:
Q  304 ccaaattgcggcttgccaaatcattctcaaaccgttacggattttctt 351  Q
    ||||||||| |||||||||||||||||||| || || |||||||||||    
T  47327776 ccaaattgccgcttgccaaatcattctcaaccccttccggattttctt 47327729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 370 - 459
Target Start/End: Complemental strand, 1547719 - 1547630
Alignment:
Q  370 ccaacattcccaatggacgaataagttgggtggcattacaaaattcgaatccaaccacaccatcaagttaagccaaatatttctagccat 459  Q
    ||||||||||||||| |  | ||| || |||||||||||||||||| |||| ||||||| |||||  || | ||||| ||| ||||||||    
T  1547719 ccaacattcccaatgaataattaaattcggtggcattacaaaattcaaatctaaccacaacatcacattcaaccaaacattcctagccat 1547630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 546 - 619
Target Start/End: Complemental strand, 22350217 - 22350144
Alignment:
Q  546 atctccaaattcaccctatttggaatccggtctagcaaggccttccacacaaaagtgttcaccttggttggaac 619  Q
    |||||||||||||  ||| ||||||| |||||||  || |||||||||||||||| | ||||||| | ||||||    
T  22350217 atctccaaattcaatctagttggaatgcggtctaaaaatgccttccacacaaaagcggtcaccttagatggaac 22350144  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 627 - 664
Target Start/End: Original strand, 42774146 - 42774183
Alignment:
Q  627 ttccaaatttgacggaacaccctcctttccccttccgg 664  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  42774146 ttccaaatatgacgaaacaccctcctttccccttccgg 42774183  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 293 - 346
Target Start/End: Complemental strand, 38548194 - 38548141
Alignment:
Q  293 ttccaaatgacccaaattgcggcttgccaaatcattctcaaaccgttacggatt 346  Q
    ||||| || ||||||||||| |||||||||||||| |||||||| || ||||||    
T  38548194 ttccacataacccaaattgccgcttgccaaatcatcctcaaacctttccggatt 38548141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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