View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5110_low_22 (Length: 448)

Name: NF5110_low_22
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5110_low_22
NF5110_low_22
[»] chr8 (14 HSPs)
chr8 (16-433)||(39785601-39786020)
chr8 (212-446)||(39791392-39791628)
chr8 (200-433)||(39795806-39796041)
chr8 (224-433)||(39777329-39777540)
chr8 (16-173)||(6863047-6863205)
chr8 (16-133)||(34018199-34018316)
chr8 (20-148)||(4472242-4472369)
chr8 (40-172)||(41957463-41957597)
chr8 (16-104)||(5654688-5654776)
chr8 (16-84)||(38825803-38825871)
chr8 (39-141)||(11109571-11109673)
chr8 (120-170)||(34856501-34856551)
chr8 (39-141)||(11595554-11595658)
chr8 (17-82)||(33474227-33474292)
[»] chr5 (4 HSPs)
chr5 (16-171)||(33155525-33155680)
chr5 (16-173)||(3769800-3769952)
chr5 (25-148)||(2818964-2819087)
chr5 (20-65)||(25928067-25928112)
[»] chr3 (10 HSPs)
chr3 (16-173)||(40386304-40386460)
chr3 (16-172)||(49596626-49596782)
chr3 (16-172)||(42347319-42347474)
chr3 (29-172)||(20753206-20753349)
chr3 (88-168)||(35052546-35052626)
chr3 (17-114)||(2585899-2585996)
chr3 (16-79)||(48184550-48184613)
chr3 (20-78)||(4221643-4221701)
chr3 (71-128)||(7882811-7882868)
chr3 (43-83)||(17105986-17106026)
[»] chr7 (6 HSPs)
chr7 (17-168)||(46981316-46981465)
chr7 (19-102)||(23940547-23940630)
chr7 (18-168)||(6856917-6857071)
chr7 (58-111)||(11457626-11457679)
chr7 (29-99)||(37105485-37105555)
chr7 (16-64)||(39611732-39611780)
[»] chr4 (7 HSPs)
chr4 (32-154)||(8482358-8482480)
chr4 (16-148)||(34113638-34113770)
chr4 (101-173)||(43405221-43405293)
chr4 (19-97)||(6365202-6365280)
chr4 (16-111)||(15835339-15835434)
chr4 (20-95)||(26688736-26688810)
chr4 (16-148)||(43613648-43613779)
[»] chr6 (3 HSPs)
chr6 (20-168)||(2188708-2188856)
chr6 (20-133)||(2572277-2572391)
chr6 (20-84)||(13587603-13587667)
[»] chr1 (9 HSPs)
chr1 (23-109)||(39742538-39742624)
chr1 (16-97)||(7890386-7890467)
chr1 (30-111)||(27925348-27925429)
chr1 (17-77)||(6586876-6586936)
chr1 (19-91)||(46014516-46014588)
chr1 (33-92)||(49920309-49920368)
chr1 (16-81)||(7890268-7890333)
chr1 (16-65)||(8041410-8041459)
chr1 (26-62)||(7817340-7817376)
[»] chr2 (3 HSPs)
chr2 (17-155)||(4522266-4522404)
chr2 (16-80)||(37609341-37609405)
chr2 (20-110)||(17104575-17104665)


Alignment Details
Target: chr8 (Bit Score: 389; Significance: 0; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 16 - 433
Target Start/End: Original strand, 39785601 - 39786020
Alignment:
Q  16 caagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgactttttgaactaatggtgc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  39785601 caagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgactttttgaactaatggcgc 39785700  T
Q  116 aaaggacacttgtgcatgatgcaagaccattttccttgtgtatgttggacaaagcctactttgagttcctctaatattttctgcaattgcattggctcct 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  39785701 aaaggacacttgtgcatgatgcaagaccattttccttgtgtatgttggacaaagcctactttgagttcctctaatattttctacaattgcattgggtcct 39785800  T
Q  216 tattttcttgatggcaggtagatgtaggtaatagaccagtaactggccttagattacaattggaagggagtagaagcaaccggttggccattcatctgca 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39785801 tattttcttgatggcaggtagatgtaggtaatagaccagtaactggccttagattacaattggaagggagtagaagcaaccggttggccattcatctgca 39785900  T
Q  316 gcatctagcttccctacccaagtccttaccacttgcagacaatgcaaatgcatatttatc--gtgactcatacagctgtaccttccataagaaagtgaaa 413  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  39785901 gcatctagcttccttacccaagtccttaccacttgcagacaatgcaaatgcatatttatcttgtgactcatacagctgtaccttccataagaaagtgaaa 39786000  T
Q  414 cggaattgcttttcatatgt 433  Q
    ||||| ||||||||||||||    
T  39786001 cggaactgcttttcatatgt 39786020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 212 - 446
Target Start/End: Original strand, 39791392 - 39791628
Alignment:
Q  212 tccttattttcttgatggcaggtagatgtaggtaatagaccagtaactggccttagattacaattggaagggagtagaagcaaccggttggccattcatc 311  Q
    ||||| ||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39791392 tcctttttttcttaatggtaggtagatgtaggtaaaagaccagtaactggccttagattacaattggaagggagtagaagcaaccggttggccattcatc 39791491  T
Q  312 tgcagcatctagcttccctacccaagtccttaccacttgcagacaatgcaaatgcatatttatc--gtgactcatacagctgtaccttccataagaaagt 409  Q
    |||||||||| |||||||||||||||||||||||||| || ||||||| |||| | ||||||||  || |||| |||||||||| |||||||||||||||    
T  39791492 tgcagcatctggcttccctacccaagtccttaccactcgcggacaatgaaaatacttatttatcttgtaactcgtacagctgtaacttccataagaaagt 39791591  T
Q  410 gaaacggaattgcttttcatatgtctgtgctcctcct 446  Q
    |||| |||| |||||||||||| ||||| || |||||    
T  39791592 gaaatggaactgcttttcatatatctgtactgctcct 39791628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 200 - 433
Target Start/End: Original strand, 39795806 - 39796041
Alignment:
Q  200 aattgcattggctccttattttcttgatggcaggtagatgtaggtaatagaccagtaactggccttagattacaattggaagggagtagaagcaaccggt 299  Q
    ||||||||| ||| ||| ||||||||||| |||||||||||||| | ||| ||||||||||||||||||||||||||||||||||  |||||||||||||    
T  39795806 aattgcattagcttctttttttcttgatgacaggtagatgtaggcattaggccagtaactggccttagattacaattggaagggaaaagaagcaaccggt 39795905  T
Q  300 tggccattcatctgcagcatctagcttccctacccaagtccttaccacttgcagacaatgcaaatgcatatt--tatcgtgactcatacagctgtacctt 397  Q
    |||||||| ||||||||||||| | ||| |||||||||||||||||||| ||||||||||||  ||| ||||  | | ||||||| || ||||| |  |     
T  39795906 tggccattaatctgcagcatctggtttctctacccaagtccttaccactagcagacaatgcacctgcttattcgtcttgtgactcgtatagctgcaagta 39796005  T
Q  398 ccataagaaagtgaaacggaattgcttttcatatgt 433  Q
    ||| |||||| ||||| |||| ||||||||||||||    
T  39796006 ccacaagaaactgaaatggaactgcttttcatatgt 39796041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 224 - 433
Target Start/End: Original strand, 39777329 - 39777540
Alignment:
Q  224 tgatggcaggtagatgtaggtaatagaccagtaactggccttagattacaattggaagggagtagaagcaaccggttggccattcatctgcagcatctag 323  Q
    |||||| |||||||||| |||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||| || ||||||||      
T  39777329 tgatggaaggtagatgttggtaatagaccagtaattggcctgagattacaattggaagggagaagaagcaaccggttggccattcaccttcagcatctga 39777428  T
Q  324 cttccctacccaagtccttaccacttgcagacaatgcaaatgcatatttatc--gtgactcatacagctgtaccttccataagaaagtgaaacggaattg 421  Q
    ||||  |||| |||||||||||||| |||||||| |||||||| ||||| ||  ||||||| || ||||| |  |||||||||||||||||| |||  ||    
T  39777429 cttctttaccaaagtccttaccactcgcagacaacgcaaatgcctatttgtcttgtgactcctatagctgcaatttccataagaaagtgaaatggagctg 39777528  T
Q  422 cttttcatatgt 433  Q
    ||||||||||||    
T  39777529 cttttcatatgt 39777540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 6863047 - 6863205
Alignment:
Q  16 caagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgac-tttttgaactaatggtg 114  Q
    ||||||||||||||| || |||||||||| |||||||||||||||||||| ||| |||||||||||||| | ||||| |||| ||||| | |||||||||    
T  6863047 caagtcttgcatcatacacaagctagtttccaccattggatcaataaatctcaccattaaattaaatgaaatatgatgtgactttttttatctaatggtg 6863146  T
Q  115 caaaggacacttgtgcatgatgcaagaccattttccttgtgtatgttggacaaagccta 173  Q
     ||| | |||||||||||| |||||||||||||| |||||| ||||| |||||||||||    
T  6863147 gaaaaggcacttgtgcatggtgcaagaccattttgcttgtgcatgttagacaaagccta 6863205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 133
Target Start/End: Complemental strand, 34018316 - 34018199
Alignment:
Q  16 caagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgactttttgaactaatggtgc 115  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||| |  ||||||     
T  34018316 caagtcttgcatcatgcacaagctagtttttaccattggatcaataaattccaccattaaattaaatgagaaatgatttgactttttgatccgatggtga 34018217  T
Q  116 aaaggacacttgtgcatg 133  Q
    ||| |  |||||||||||    
T  34018216 aaaagttacttgtgcatg 34018199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 148
Target Start/End: Complemental strand, 4472369 - 4472242
Alignment:
Q  20 tcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgactttttgaactaatggtgcaaag 119  Q
    |||||||| | ||||||  ||||||| |||||| ||||||||||||  ||| ||||||||||||||| |||||||||||| |||| | | | ||| |||     
T  4472369 tcttgcattacgcataaattagtttt-accattagatcaataaatcttacatttaaattaaatgagatatgatatgacttattgatccattagtgaaaaa 4472271  T
Q  120 gacacttgtgcatgatgcaagaccatttt 148  Q
    |||||||||||||||||||||||||||||    
T  4472270 gacacttgtgcatgatgcaagaccatttt 4472242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 172
Target Start/End: Complemental strand, 41957597 - 41957463
Alignment:
Q  40 agttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgactttttgaactaatggtgcaaa--ggacacttgtgcatgatgc 137  Q
    ||||| |||||||| ||||||||||  ||| |||||||||||| | | ||||||||||||||| | | ||||  | |||   |||| ||||||||| |||    
T  41957597 agtttccaccattgaatcaataaatttcacgattaaattaaataaaatatgatatgactttttaatccaatgacggaaattagacatttgtgcatggtgc 41957498  T
Q  138 aagaccattttccttgtgtatgttggacaaagcct 172  Q
    ||||||||||| |||||| ||||| ||||| ||||    
T  41957497 aagaccattttacttgtgcatgttagacaaggcct 41957463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 5654776 - 5654688
Alignment:
Q  16 caagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgactttttga 104  Q
    ||||||||| ||||| || || | | ||||||||| | ||| ||||||| |||| |||||||||||||||| |||||||||||| ||||    
T  5654776 caagtcttgtatcatacagaaacaaattttcaccacttgataaataaattccactattaaattaaatgagatatgatatgacttattga 5654688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 38825803 - 38825871
Alignment:
Q  16 caagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatga 84  Q
    ||||||||||||||||||||| ||| ||||| |||||| || |||||||| ||| | |||| |||||||    
T  38825803 caagtcttgcatcatgcataaactatttttctccattgcattaataaatctcaccaataaactaaatga 38825871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 141
Target Start/End: Complemental strand, 11109673 - 11109571
Alignment:
Q  39 tagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgactttttgaactaatggtgcaaaggacacttgtgcatgatgca 138  Q
    ||||||||| | | |||||||||||| | || ||||||||||||| || ||||||||| |  |||| | ||| ||  |||||| | ||||||||||||||    
T  11109673 tagttttcatcgtaggatcaataaattctactattaaattaaatgggatatgatatgattgattgatcaaatagtaaaaaggatatttgtgcatgatgca 11109574  T
Q  139 aga 141  Q
    |||    
T  11109573 aga 11109571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 170
Target Start/End: Original strand, 34856501 - 34856551
Alignment:
Q  120 gacacttgtgcatgatgcaagaccattttccttgtgtatgttggacaaagc 170  Q
    |||||||||||||| |||||||| ||||| |||||| ||||| ||||||||    
T  34856501 gacacttgtgcatggtgcaagactattttgcttgtgcatgttagacaaagc 34856551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 141
Target Start/End: Complemental strand, 11595658 - 11595554
Alignment:
Q  39 tagttttcaccattggatcaataaatcc--cacaattaaattaaatgagaaatgatatgactttttgaactaatggtgcaaaggacacttgtgcatgatg 136  Q
    ||||||||| |||||||||||||||| |  |||  |||||||||||| || ||||||||| |  |||| | ||| ||  |||||| | ||||||||||||    
T  11595658 tagttttcatcattggatcaataaattctacacttttaaattaaatgggatatgatatgaatgattgatcaaatagtaaaaaggatatttgtgcatgatg 11595559  T
Q  137 caaga 141  Q
    |||||    
T  11595558 caaga 11595554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 33474227 - 33474292
Alignment:
Q  17 aagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaat 82  Q
    ||||||||||||||| | ||| | |||||||||||| ||||||||| |  ||| ||||||||||||    
T  33474227 aagtcttgcatcatgtacaaggttgttttcaccatttgatcaataagtttcaccattaaattaaat 33474292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 6e-47; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 16 - 171
Target Start/End: Complemental strand, 33155680 - 33155525
Alignment:
Q  16 caagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgactttttgaactaatggtgc 115  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |  ||||||     
T  33155680 caagtcttgcatcatgcacaagctagttttcaccattggatcaataaatcccaccattaaattaaatgagaaatgatttgactttttgatccgatggtga 33155581  T
Q  116 aaaggacacttgtgcatgatgcaagaccattttccttgtgtatgttggacaaagcc 171  Q
    ||| | |||||||||||| |||| ||||||||| |||||| |||||  ||||||||    
T  33155580 aaaagtcacttgtgcatggtgcaggaccattttgcttgtgcatgttaaacaaagcc 33155525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 16 - 173
Target Start/End: Complemental strand, 3769952 - 3769800
Alignment:
Q  16 caagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgactttttgaactaatggtgc 115  Q
    |||||||||||||||||| ||| ||||||||||||||||| ||||    ||||| |||| || |||||||| |||||||||||| |||| | |||||||     
T  3769952 caagtcttgcatcatgcacaagttagttttcaccattggaccaat----cccaccattagatcaaatgagatatgatatgacttgttgatccaatggtga 3769857  T
Q  116 aaaggacacttgtgcatgatgcaagaccattttccttgtgtatgttggacaaagccta 173  Q
    |||| ||||||||||||| ||||||| |||||| |||||||||||  |||||||||||    
T  3769856 aaagaacacttgtgcatggtgcaaga-cattttacttgtgtatgtgagacaaagccta 3769800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 148
Target Start/End: Original strand, 2818964 - 2819087
Alignment:
Q  25 catcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgactttttgaactaatggtgcaaaggacac 124  Q
    |||||| || ||| ||||||||| ||||||||||||||||| ||| |||| ||||||||| | |||||   |||| |||| | ||| ||  ||| |||      
T  2818964 catcatacacaagttagttttcatcattggatcaataaatctcaccattagattaaatgaaatatgatgcaacttattgatccaatagtaaaaaagacgt 2819063  T
Q  125 ttgtgcatgatgcaagaccatttt 148  Q
    ||||||||| ||||||||||||||    
T  2819064 ttgtgcatggtgcaagaccatttt 2819087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 25928112 - 25928067
Alignment:
Q  20 tcttgcatcatgcataagctagttttcaccattggatcaataaatc 65  Q
    |||||||||||||| || ||| ||||||||||| ||||||||||||    
T  25928112 tcttgcatcatgcacaaactaattttcaccattagatcaataaatc 25928067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 40386304 - 40386460
Alignment:
Q  16 caagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgactttttgaactaatggtgc 115  Q
    ||||| |||||||||||| |||| ||||| |||||||||||||||||||| ||| ||||||||||||||  ||| || |||| |||||| | ||||||||    
T  40386304 caagttttgcatcatgcacaagccagtttccaccattggatcaataaatctcactattaaattaaatgaataattatgtgac-ttttgatccaatggtgc 40386402  T
Q  116 aaaggacacttgtgcatgatgcaagaccattttccttgtgtatgttggacaaagccta 173  Q
    ||| |||||||||||||| ||||| ||| ||||  || || ||||| |||||||||||    
T  40386403 aaaagacacttgtgcatggtgcaaaacctttttgtttttgcatgttagacaaagccta 40386460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 16 - 172
Target Start/End: Complemental strand, 49596782 - 49596626
Alignment:
Q  16 caagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgactttttgaactaatggtgc 115  Q
    ||||||||| ||||||| ||||||| ||| |||||||| | ||||||||| ||| ||||||||||| || | ||||| ||||||||| | |||||| ||     
T  49596782 caagtcttgtatcatgcgtaagctaatttccaccattgaaccaataaatctcactattaaattaaacgaaatatgatgtgactttttaatctaatgatgg 49596683  T
Q  116 aaaggacacttgtgcatgatgcaagaccattttccttgtgtatgttggacaaagcct 172  Q
    ||| ||||| ||||||||||| ||||| ||||| |||||  ||||| ||||||||||    
T  49596682 aaatgacacgtgtgcatgatgtaagactattttgcttgtccatgttagacaaagcct 49596626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 172
Target Start/End: Original strand, 42347319 - 42347474
Alignment:
Q  16 caagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgactttttgaactaatggtgc 115  Q
    |||||||||||| ||||| ||||||||||| |  |||||||||||||||| ||  ||||||||| |||||| |||||  ||||| || | | |||||||     
T  42347319 caagtcttgcat-atgcacaagctagtttttattattggatcaataaatctcatcattaaattatatgagatatgatgcgacttattaatccaatggtga 42347417  T
Q  116 aaaggacacttgtgcatgatgcaagaccattttccttgtgtatgttggacaaagcct 172  Q
    ||||||||||| | |||| |||||||||||||| |||||| |  || ||||||||||    
T  42347418 aaaggacacttattcatggtgcaagaccattttgcttgtgcaatttagacaaagcct 42347474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 29 - 172
Target Start/End: Original strand, 20753206 - 20753349
Alignment:
Q  29 atgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgactttttgaactaatggtgcaaaggacacttgt 128  Q
    |||||||||||||||| || ||| ||||||||||||| ||   |||||| |||||| | || || ||||||||||||| ||||||| ||| |||| ||||    
T  20753206 atgcataagctagtttccatcatcggatcaataaatctcatcgttaaatgaaatgaaatataatgtgactttttgaaccaatggtggaaaagacatttgt 20753305  T
Q  129 gcatgatgcaagaccattttccttgtgtatgttggacaaagcct 172  Q
     || | || ||||||||||| |||||| ||||  ||||||||||    
T  20753306 acacggtggaagaccattttacttgtgcatgtaagacaaagcct 20753349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 88 - 168
Target Start/End: Original strand, 35052546 - 35052626
Alignment:
Q  88 atgatatgactttttgaactaatggtgcaaaggacacttgtgcatgatgcaagaccattttccttgtgtatgttggacaaa 168  Q
    ||||| ||||||||||| | ||||||| ||| |||||||||||||||||||| | |||||| |||||| ||||| ||||||    
T  35052546 atgatgtgactttttgatccaatggtggaaaagacacttgtgcatgatgcaatatcattttgcttgtgcatgttagacaaa 35052626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 2585996 - 2585899
Alignment:
Q  17 aagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgactttttgaactaatggtg 114  Q
    ||||||||||||||  |||| |||||||| |||||| ||| |||||||  ||   ||||||||||||||| || ||||||||| |||| |||| ||||    
T  2585996 aagtcttgcatcatctataaactagttttaaccattagataaataaatttcattgttaaattaaatgagatataatatgacttattgatctaacggtg 2585899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 48184613 - 48184550
Alignment:
Q  16 caagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaatta 79  Q
    |||||||||||||||||| || ||||||||  |||||| ||||||||||| ||| |||| ||||    
T  48184613 caagtcttgcatcatgcacaacctagtttttgccattgaatcaataaatctcaccattagatta 48184550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 4221643 - 4221701
Alignment:
Q  20 tcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaatt 78  Q
    |||||||||| ||| || ||| ||||||| |||||||||||||||| ||| ||||||||    
T  4221643 tcttgcatcacgcacaaactaattttcactattggatcaataaatctcaccattaaatt 4221701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 128
Target Start/End: Complemental strand, 7882868 - 7882811
Alignment:
Q  71 attaaattaaatgagaaatgatatgactttttgaactaatggtgcaaaggacacttgt 128  Q
    |||||||||||||||||||||||| |||||| || ||||| ||  ||| |||||||||    
T  7882868 attaaattaaatgagaaatgatataacttttggatctaatagtaaaaacgacacttgt 7882811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 83
Target Start/End: Original strand, 17105986 - 17106026
Alignment:
Q  43 tttcaccattggatcaataaatcccacaattaaattaaatg 83  Q
    |||||||||||||| |||||| ||||| |||||||||||||    
T  17105986 tttcaccattggattaataaaacccaccattaaattaaatg 17106026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 17 - 168
Target Start/End: Complemental strand, 46981465 - 46981316
Alignment:
Q  17 aagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgactttttgaactaatggtgca 116  Q
    ||||||||||||| | | |||||| ||||||||||||||||||||| |  ||| |||||||||| ||||||||  ||||||||||||| | ||||||| |    
T  46981465 aagtcttgcatcaagtacaagctaattttcaccattggatcaataatttacaccattaaattaattgagaaat--tatgactttttgatccaatggtgaa 46981368  T
Q  117 aaggacacttgtgcatgatgcaagaccattttccttgtgtatgttggacaaa 168  Q
    || | |||||||||||| |||||||||||||  |||||| ||||| ||||||    
T  46981367 aacggcacttgtgcatggtgcaagaccatttagcttgtgcatgttagacaaa 46981316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 23940547 - 23940630
Alignment:
Q  19 gtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgacttttt 102  Q
    ||||||||||||||| |||||| |||||| | || |||||||||||| ||| |||||||||||||| | || ||| ||||||||    
T  23940547 gtcttgcatcatgcacaagctacttttcatcgttagatcaataaatctcaccattaaattaaatgaaatataatacgacttttt 23940630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 168
Target Start/End: Original strand, 6856917 - 6857071
Alignment:
Q  18 agtcttgcatcatgcataagctagttttcaccattggatc----aataaatcccacaattaaattaaatgagaaatgatatgactttttgaactaatggt 113  Q
    |||||||||||||||||| |||||||| || |||||||||    | |||||| ||  || ||||||||||| |  |||| | ||||||| | ||||||||    
T  6856917 agtcttgcatcatgcataggctagtttccatcattggatcagtaagtaaatctcaacatcaaattaaatgaaatttgatgttacttttttatctaatggt 6857016  T
Q  114 gcaaaggacacttgtgcatgatgcaagaccattttccttgtgtatgttggacaaa 168  Q
    | ||| || ||||||||||| |||||| | ||||| |||||  ||||| ||||||    
T  6857017 ggaaaagaaacttgtgcatggtgcaaggctattttgcttgtacatgttagacaaa 6857071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 11457626 - 11457679
Alignment:
Q  58 aataaatcccacaattaaattaaatgagaaatgatatgactttttgaactaatg 111  Q
    ||||||| |||| ||||||||||||||||| |||| ||||||||||| ||||||    
T  11457626 aataaattccaccattaaattaaatgagaagtgatgtgactttttgatctaatg 11457679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 99
Target Start/End: Complemental strand, 37105555 - 37105485
Alignment:
Q  29 atgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgactt 99  Q
    ||||| |||||||||||||| |  ||| |||||||| |||| |||||||||||||||| || || ||||||    
T  37105555 atgcacaagctagttttcactaccggagcaataaattccactattaaattaaatgagatataatgtgactt 37105485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 39611780 - 39611732
Alignment:
Q  16 caagtcttgcatcatgcataagctagttttcaccattggatcaataaat 64  Q
    |||||||||||| ||| |||| ||| ||| |||||||||||||||||||    
T  39611780 caagtcttgcataatgaataaactattttgcaccattggatcaataaat 39611732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 32 - 154
Target Start/End: Original strand, 8482358 - 8482480
Alignment:
Q  32 cataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgactttttgaactaatggtgcaaaggacacttgtgca 131  Q
    ||||| ||||||||||||||||| |||||||||  ||| |||||||||||||| | |||| |||||||||||| ||||||||| |   ||| ||||||||    
T  8482358 cataaactagttttcaccattggttcaataaatttcaccattaaattaaatgaaatatgacatgactttttgatctaatggtggatcagacgcttgtgca 8482457  T
Q  132 tgatgcaagaccattttccttgt 154  Q
    |  |||||||||||||| |||||    
T  8482458 tagtgcaagaccatttttcttgt 8482480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 148
Target Start/End: Original strand, 34113638 - 34113770
Alignment:
Q  16 caagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgactttttgaactaatggtgc 115  Q
    ||||| |||||||||| ||||| ||||||| | ||||| ||||||||||| ||| |||||||||||||| | ||||| |||||| |||| | |||| |      
T  34113638 caagtgttgcatcatgtataagttagtttttatcattgaatcaataaatctcactattaaattaaatgatatatgatgtgacttattgatcaaatgatat 34113737  T
Q  116 aaaggacacttgtgcatgatgcaagaccatttt 148  Q
    ||| || |||||||||||||||||||| |||||    
T  34113738 aaatgatacttgtgcatgatgcaagacaatttt 34113770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 101 - 173
Target Start/End: Original strand, 43405221 - 43405293
Alignment:
Q  101 ttgaactaatggtgcaaaggacacttgtgcatgatgcaagaccattttccttgtgtatgttggacaaagccta 173  Q
    |||| ||||||||| |||||| ||||||||||||||||||| |||||| |||||||||||| |||||| ||||    
T  43405221 ttgatctaatggtgaaaaggatacttgtgcatgatgcaagatcattttacttgtgtatgttagacaaaaccta 43405293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 6365202 - 6365280
Alignment:
Q  19 gtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgac 97  Q
    ||||||||||||||||| | || |||| | ||||||||||||||||  ||| |||||||||||| ||| || |||||||    
T  6365202 gtcttgcatcatgcatatgttaatttttatcattggatcaataaatttcactattaaattaaataagatataatatgac 6365280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 111
Target Start/End: Complemental strand, 15835434 - 15835339
Alignment:
Q  16 caagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgactttttgaactaatg 111  Q
    ||||||||| |||||||| ||||||| |||| | |||||||||||||||  ||| ||||| | |||| | | |||||  |||||||||| ||||||    
T  15835434 caagtcttgtatcatgcagaagctaggtttcgcaattggatcaataaatttcacgattaagtgaaataaaatatgatgcgactttttgatctaatg 15835339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 26688810 - 26688736
Alignment:
Q  20 tcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatg 95  Q
    ||||||||||||| |||  ||||||||| |||| ||||||||| | |||| |||||||||||||||| || |||||    
T  26688810 tcttgcatcatgcctaaattagttttcatcatttgatcaataact-ccaccattaaattaaatgagatatcatatg 26688736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 148
Target Start/End: Original strand, 43613648 - 43613779
Alignment:
Q  16 caagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgactttttgaactaatggtgc 115  Q
    ||||||||||||||  || || |||||||||||  ||| |||||||||| | || ||| ||||||||||||  ||||||||||| |||| || ||| |      
T  43613648 caagtcttgcatcaaacacaaactagttttcactgttg-atcaataaattcaaccatttaattaaatgagacgtgatatgacttattgatctgatgataa 43613746  T
Q  116 aaaggacacttgtgcatgatgcaagaccatttt 148  Q
    ||| || |||| | |||| || |||||||||||    
T  43613747 aaaagatacttatacatggtgtaagaccatttt 43613779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 168
Target Start/End: Original strand, 2188708 - 2188856
Alignment:
Q  20 tcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgactttttgaactaatggtgcaaag 119  Q
    |||||||||||| | ||||||||||  ||| |||||||||||||||  ||||||||||||||||| | ||||||||| ||||| |   |||  || |||     
T  2188708 tcttgcatcatgtagaagctagtttctacctttggatcaataaatcttacaattaaattaaatgaaatatgatatgattttttaattcaattttggaaaa 2188807  T
Q  120 gacacttgtgcatgatgcaagaccattttccttgtgtatgttggacaaa 168  Q
     ||| |||| ||||| | |||| |||||||||| |||||||| ||||||    
T  2188808 aacatttgtccatgaagtaagatcattttccttatgtatgttagacaaa 2188856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 133
Target Start/End: Original strand, 2572277 - 2572391
Alignment:
Q  20 tcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatg-agaaatgatatgactttttgaactaatggtgcaaa 118  Q
    |||||||||||||| ||  ||||||| | ||||||| ||||||||| ||| ||||||||| ||| |||  |||| |||||| |||| ||||||||  |||    
T  2572277 tcttgcatcatgcaaaatttagttttaaacattggaccaataaatctcacgattaaattatatgaagatgtgatgtgacttattgatctaatggtaaaaa 2572376  T
Q  119 ggacacttgtgcatg 133  Q
      |||||||||||||    
T  2572377 aaacacttgtgcatg 2572391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 13587603 - 13587667
Alignment:
Q  20 tcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatga 84  Q
    ||||||| |||||||||| | ||||  ||||||||||||||||||| ||| |||||||| |||||    
T  13587603 tcttgcaccatgcataaggttgtttctaccattggatcaataaatctcactattaaattgaatga 13587667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 23 - 109
Target Start/End: Original strand, 39742538 - 39742624
Alignment:
Q  23 tgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgactttttgaactaa 109  Q
    ||||||||| | || |||||||| ||| || |||||||||||||||| |||||||||||||| | |||| ||||||| |||| ||||    
T  39742538 tgcatcatgtacaaactagtttttacccttagatcaataaatcccaccattaaattaaatgaaatatgacatgacttattgatctaa 39742624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 7890386 - 7890467
Alignment:
Q  16 caagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgac 97  Q
    ||||| |||||||||||| ||  |||||||||| |||||||||||||||  ||| |||||||||||||| | ||||| ||||    
T  7890386 caagtattgcatcatgcacaaagtagttttcactattggatcaataaatttcaccattaaattaaatgaaatatgatgtgac 7890467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 111
Target Start/End: Complemental strand, 27925429 - 27925348
Alignment:
Q  30 tgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgactttttgaactaatg 111  Q
    |||||||| |||||| |||||||||||||||||||  ||  ||||||| |||||||| ||||| ||| || |||| ||||||    
T  27925429 tgcataagttagtttccaccattggatcaataaatttcatgattaaataaaatgagatatgatgtgatttattgatctaatg 27925348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 6586876 - 6586936
Alignment:
Q  17 aagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaat 77  Q
    |||| ||| |||||||| || ||| ||||||| ||||||||||||||| ||||||||||||    
T  6586876 aagttttgtatcatgcacaatctaattttcactattggatcaataaataccacaattaaat 6586936  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 46014516 - 46014588
Alignment:
Q  19 gtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatga 91  Q
    |||||| |||||| | ||||||||||||| |||| ||||||| ||||| || |||||||| ||||||| ||||    
T  46014516 gtcttgtatcatgtacaagctagttttcatcattagatcaatgaatccaactattaaatttaatgagatatga 46014588  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 49920309 - 49920368
Alignment:
Q  33 ataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgat 92  Q
    ||||| |||||| ||| |||||||||||||||| ||| ||||||| |||||||| |||||    
T  49920309 ataagttagtttccacaattggatcaataaatcacaccattaaatcaaatgagatatgat 49920368  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 7890268 - 7890333
Alignment:
Q  16 caagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaa 81  Q
    |||||||||||||||||| || ||| |||||||| ||| ||||||||||  ||| | |||||||||    
T  7890268 caagtcttgcatcatgcacaaactaattttcacccttgaatcaataaatttcaccactaaattaaa 7890333  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 8041410 - 8041459
Alignment:
Q  16 caagtcttgcatcatgcataagctagttttcaccattggatcaataaatc 65  Q
    ||||| ||||||||| |||||||||||||||| ||||  |||||||||||    
T  8041410 caagttttgcatcatacataagctagttttcaacattaaatcaataaatc 8041459  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 7817340 - 7817376
Alignment:
Q  26 atcatgcataagctagttttcaccattggatcaataa 62  Q
    |||||||| |||||||||||||| |||||||||||||    
T  7817340 atcatgcacaagctagttttcacaattggatcaataa 7817376  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 155
Target Start/End: Complemental strand, 4522404 - 4522266
Alignment:
Q  17 aagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgactttttgaactaatggtgca 116  Q
    ||||||||||||||||| ||  |||||| || || |||||||||||  | ||| | || || |||||||| |||||  ||||| ||||   ||||||| |    
T  4522404 aagtcttgcatcatgcacaaattagtttccatcactggatcaataagcctcaccagtagatcaaatgagatatgatgggacttattgattcaatggtgaa 4522305  T
Q  117 aaggacacttgtgcatgatgcaagaccattttccttgtg 155  Q
    | | ||||||||| |||||||||||| ||||| ||||||    
T  4522304 aggcacacttgtgaatgatgcaagactattttacttgtg 4522266  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 37609405 - 37609341
Alignment:
Q  16 caagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaa 80  Q
    |||||||||||||||||||  | | |||| ||||||| ||||| |||||| ||||||||||||||    
T  37609405 caagtcttgcatcatgcatccgttggtttccaccattagatcattaaatctcacaattaaattaa 37609341  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 17104575 - 17104665
Alignment:
Q  20 tcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgactttttgaactaat 110  Q
    |||||||||||| |||| ||| |||| |  ||| |||||||||||||||  ||| |||||||||| | | ||| ||||||||||| |||||    
T  17104575 tcttgcatcatgtataaactaatttttattatttgatcaataaatcccatcattcaattaaatgaaataagatgtgactttttgatctaat 17104665  T

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