View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5110_low_23 (Length: 442)
Name: NF5110_low_23
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 6 - 432
Target Start/End: Original strand, 24185784 - 24186210
Alignment:
| Q |
6 |
aaggagaaggccaagaagttacgccacactctcagcaagaaaaaacacgaggactggaccgctactagtccctctgcgggagcagagtcagaaggtgatg |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
24185784 |
aaggagaaggccaagaagttacgccacactctcagcaagaaaaaacacgaggattggaccgctactagtccctctgcgggagcagggtcagaaggtgatg |
24185883 |
T |
|
| Q |
106 |
gagcagaagaagatgctgaatatcatggagctccgagtaataaaataaatatataattgtcttctcttaatccttttttatttatatacatataattgtt |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
24185884 |
gagcagaagaagatgctgaatatcatggagctccgagtaataaaataaatatataattgtcttctcttaattcttttttatttatatacatataattgtt |
24185983 |
T |
|
| Q |
206 |
gtctcaaattaatatttcagtgtatgaatccgagatggcacctgaaggatacaaagaaaatgtcaggcaacattcaagaatgagtccaagaagcccacag |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24185984 |
gtctcaaattaatatttcagtgtatgaatccgagatggcacctgaaggatacaaagaaaatgtcaggcaacattcaagaatgagtccaagaagcccacag |
24186083 |
T |
|
| Q |
306 |
acacatgttctgtcaaacaatgagaaacttggattagaacaagctagagaaaagacgctgagtcgttcactttcgaggaaaacaacacatccagctgcaa |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24186084 |
acacatgttctgtcaaacaatgagaaacttggattagaacaagctagagaaaagacgctgagtcgttcactttcgaggaaaacaacacatccagctgcaa |
24186183 |
T |
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| Q |
406 |
ctgctgctacttctactacactctctg |
432 |
Q |
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||||||||||||||||||||||||||| |
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| T |
24186184 |
ctgctgctacttctactacactctctg |
24186210 |
T |
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