View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5110_low_24 (Length: 435)
Name: NF5110_low_24
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110_low_24 |
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| [»] scaffold0903 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 11 - 421
Target Start/End: Original strand, 21716913 - 21717323
Alignment:
| Q |
11 |
agagagtattcgaatagcagaggatctcactcattttcaatttctggaaacggtggatcgcgcaatattggtggtggattccgcagcattggccgtaacc |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||| ||||||||||| |
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| T |
21716913 |
agagggtattcgaatagcagaggatctcactcattttcaatttccagaaacggtggatcgtgcaatattggtggtggatcccgcagcagtggccgtaacc |
21717012 |
T |
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| Q |
111 |
caaacagcggtggtcgtaaccccaagcagatgatgtctatgttacctgtttgtggctgtaacctccctatgaggatgtatatagcaaacacatttgagaa |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21717013 |
caaacagcggtggtcgtaaccccaagcagatgatgtctatgttacctgtttgtggttgtaacctccctatgaggatgtatatagcaaacacatttgagaa |
21717112 |
T |
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| Q |
211 |
tcaaggacgcaggttctggcgctgtacaaggtggaatgatgaggttagtttaatcctttattgatattagctttattgtttgctggtttttggatattaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21717113 |
tcaaggacgcaggttctggcgctgtacaaggtggaatgatgaggttagtttaatcctttattgatattagctttattgtttgctggtttttggatattaa |
21717212 |
T |
|
| Q |
311 |
gtgtaatcctatattctgggtaatttatacaggatcaacatacatgtgctttgttcatttgggacgatgaatttgtcccagggatgacacacatgatgga |
410 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
21717213 |
gtgtaatcctttattctgggtaatttatacaggatcaacatacatgtgctttgttcatttgggacgatgaacttgtcccagggatgacacacatgatgga |
21717312 |
T |
|
| Q |
411 |
tgataatgctg |
421 |
Q |
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| T |
21717313 |
tgataatgctg |
21717323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 119 - 421
Target Start/End: Complemental strand, 20656640 - 20656341
Alignment:
| Q |
119 |
ggtggtcgtaaccccaagcagatgatgtctatgttacctgtttgtggctgtaacctccctatgaggatgtatatagcaaacacatttgagaatcaaggac |
218 |
Q |
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|||||||||||||| || |||||||||| || | ||||| ||||||| ||||| ||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
20656640 |
ggtggtcgtaacccgaaccagatgatgtgtacgctacctatttgtggttgtaaactccctatgaggatgtacatagcaaccacatttgagaatcaaggac |
20656541 |
T |
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| Q |
219 |
gcaggttctggcgctgtacaaggtggaatgatgaggttagtttaatcctttattgatattagctttattgtttgctggtttttggatat-taagtgtaat |
317 |
Q |
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| T |
20656540 |
gcaggttttggtgctgcagaaggtggaacg--gaggttagtttaatccttga-tgaaacacgc-ttattgtatggtgtttgttttttatataatggtaat |
20656445 |
T |
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| Q |
318 |
cctatattctgggtaatttatacaggatcaacatacatgtgctttgttcatttgggacgatgaatttgtcccagggatgacacacatgatggatgataat |
417 |
Q |
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| T |
20656444 |
cttctaatttgggtaatttatacaggaccaatatacatgtgggttgttcatttgggacgatgaacttgttccagggatgacacccacgatggatgataat |
20656345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 20656754 - 20656691
Alignment:
| Q |
26 |
agcagaggatctcactcattttcaatttctggaaacggtggatcgcgcaatattggtggtggat |
89 |
Q |
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|||||||| ||||||||||||||||| ||| ||||||||||||| ||||| | ||||||| ||| |
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| T |
20656754 |
agcagaggttctcactcattttcaatctctagaaacggtggatcccgcaagagtggtggtagat |
20656691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0903 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: scaffold0903
Description:
Target: scaffold0903; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 11 - 421
Target Start/End: Original strand, 496 - 906
Alignment:
| Q |
11 |
agagagtattcgaatagcagaggatctcactcattttcaatttctggaaacggtggatcgcgcaatattggtggtggattccgcagcattggccgtaacc |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||| ||| ||||||| |
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| T |
496 |
agagggtattcgaatagcagaggatctcactcattttcaatttccagaaacggtggatcgcgcaatattggtcgtaacccaaatagcggtggtcgtaacc |
595 |
T |
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| Q |
111 |
caaacagcggtggtcgtaaccccaagcagatgatgtctatgttacctgtttgtggctgtaacctccctatgaggatgtatatagcaaacacatttgagaa |
210 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
596 |
caaacagcggtggtcgtaaccccaagcagatgatatctatgttacttgtttgtggatgtaacctccctatgaggatgtatatagcaaacacatttgagaa |
695 |
T |
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| Q |
211 |
tcaaggacgcaggttctggcgctgtacaaggtggaatgatgaggttagtttaatcctttattgatattagctttattgtttgctggtttttggatattaa |
310 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
696 |
tcaaggacgcaggttctggcgctatacaaggtggaatgatgaggttagtttaatcctttattgatattagctttaatgtttgctggtttttggatattaa |
795 |
T |
|
| Q |
311 |
gtgtaatcctatattctgggtaatttatacaggatcaacatacatgtgctttgttcatttgggacgatgaatttgtcccagggatgacacacatgatgga |
410 |
Q |
| |
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|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
796 |
gtgtaatcctttattctgggtaatatatacaggatcaacatacatgtgctttgttcatttgggacgatgaacttgtcccagggatgacacacatgatgga |
895 |
T |
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| Q |
411 |
tgataatgctg |
421 |
Q |
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||||||||||| |
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| T |
896 |
tgataatgctg |
906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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