View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5110_low_27 (Length: 409)
Name: NF5110_low_27
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 38 - 393
Target Start/End: Original strand, 29035871 - 29036226
Alignment:
| Q |
38 |
gttaaaattaatatacatatggaacacataattaatatttctatgttcttattttatcatcaaaatttatgaccaagtgtttgaggcttgttcttgtgag |
137 |
Q |
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| T |
29035871 |
gttaaaattaatatacatatggaacacataattaatacttctatgttcttattttatcattaaaatttatgaccaagtgtttgaggcttgttcttgtgag |
29035970 |
T |
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| Q |
138 |
gtaagcaaggagcaccagtagtgaaatcagtagaatctccttctccatcttttgtgtcatcacgttgcaactgagattgattagaatctgcagtttgttg |
237 |
Q |
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| T |
29035971 |
gtaaacaaggagcaccaggagtgaaatcagtagaatctccttctccatcttttgtgtcatcacgttgcaactgagattgattagaatctgcagtttgttg |
29036070 |
T |
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| Q |
238 |
ttgttgatcactctttgaaatattttgtgcacttgaaaacaaatcaactggttcagaatctgcaatctttcctccttcaagtggtgtaccatgcttgtag |
337 |
Q |
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| T |
29036071 |
ttgttgatcactctttgaaatattttgtgcacttgaaaacaaatcaactggttcagaatctgcaatctttcctccttcaagtggtgtaccatgcttgtag |
29036170 |
T |
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| Q |
338 |
cgtaccctcagtgcttcatcttctgatagctttgcttgtgctgttccatattttat |
393 |
Q |
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| T |
29036171 |
cgtaccctcagtacttcatcttctgatagctttgcttgtgctgttccatattttat |
29036226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 29035812 - 29035870
Alignment:
| Q |
15 |
ggtatcagaaaacacacagaaaagttaaaattaatatacatatggaacacataattaat |
73 |
Q |
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| T |
29035812 |
ggtatcagaaaacacacacaaaagttaaaattaatatacatatggaacacataattaat |
29035870 |
T |
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