View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5110_low_3 (Length: 629)

Name: NF5110_low_3
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5110_low_3
NF5110_low_3
[»] chr2 (2 HSPs)
chr2 (2-617)||(33840029-33840643)
chr2 (455-513)||(32487342-32487400)
[»] chr8 (3 HSPs)
chr8 (455-514)||(31419578-31419637)
chr8 (456-513)||(19298021-19298078)
chr8 (464-513)||(31136097-31136146)
[»] chr5 (2 HSPs)
chr5 (456-554)||(34940276-34940373)
chr5 (456-514)||(4825246-4825304)
[»] chr6 (2 HSPs)
chr6 (415-554)||(13698800-13698938)
chr6 (459-519)||(11651082-11651142)
[»] chr7 (4 HSPs)
chr7 (447-519)||(26159721-26159793)
chr7 (464-517)||(372330-372383)
chr7 (455-512)||(21458335-21458392)
chr7 (456-513)||(31395418-31395475)
[»] chr4 (1 HSPs)
chr4 (456-513)||(54824749-54824806)


Alignment Details
Target: chr2 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 2 - 617
Target Start/End: Complemental strand, 33840643 - 33840029
Alignment:
Q  2 atgtattatgagggatgcttttgcatgacatatagtgtgcaaatttataacgcggtggagaaaatttgttgagagttgaatttgattgtactatacagtg 101  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33840643 atgtattatgagggatgcttttgcatgacatatagtttgcaaatttataacgcggtggagaaaatttgttgagagttgaatttgattgtactatacagtg 33840544  T
Q  102 ctatgttcgattagatgaacgacacgtttgaaagataagatggatgagtgacacacattttttatgctatgggtgtgagaggcccatttcagttgacatt 201  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  33840543 ctgtgttcgattagatgaacgacacgtttgaaagataagatggatgagtgacacacattttttatgctatgcgtgtgagaggcccatttcagttgacatt 33840444  T
Q  202 atgatcgtccgcatgatggagaagtacggagtagtaaaagagagacatgattcattttaatatcacnnnnnnnttatgaatacgttttctttaggtaatc 301  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |       ||||||||| |||||||||| | |  |    
T  33840443 atgattgtccgcatgatggagaagtacggagtagtaaaagagagacgtgattcattttaatatc-ccaaaaaattatgaatatgttttctttaagaagac 33840345  T
Q  302 aaaatgagatatattaataa-aacgacgattcatcatgcataaggtgtataaagaataatgcacccaaaagagttacaatgaccccagtgccaaaaaagc 400  Q
    |||||||||||||||||||| |||||||||||||| |  |||||||    ||||||| | |||||||||||||||| |||| | |  |||||||||||||    
T  33840344 aaaatgagatatattaataataacgacgattcatcctatataaggtacgcaaagaatgaagcacccaaaagagttataatgtcactggtgccaaaaaagc 33840245  T
Q  401 gaaggcattgtacaaaaacaacaaaaataattacatatgaacacttatatagaggagcggatgtttccaccaatcgtgataactgtaattaaacgacacc 500  Q
    ||||| |   || || ||||||||||||||||||| ||| ||||| ||| |||| || |||| ||||||| ||||||||||||| |||||||||||||||    
T  33840244 gaaggtaccataaaacaacaacaaaaataattacacatggacactcatacagagaagtggatatttccactaatcgtgataactataattaaacgacacc 33840145  T
Q  501 tgatttgatttcaatcacacgaaaataatatagcttcaccttatcaatgagaaccttatgaataggttaacgagtgttccatcgacattgtttaataacc 600  Q
    |||||||||||| | |  | | ||| ||| |||||| |||||  |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  33840144 tgatttgatttcgaccgta-ggaaagaatttagctttaccttgccaatgagaaccttatgaatatgttaacgagtgttccatcgacattgttcaataacc 33840046  T
Q  601 ttcaataattagtgtga 617  Q
    |||||||||||||||||    
T  33840045 ttcaataattagtgtga 33840029  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 455 - 513
Target Start/End: Original strand, 32487342 - 32487400
Alignment:
Q  455 gagcggatgtttccaccaatcgtgataactgtaattaaacgacacctgatttgatttca 513  Q
    |||||||||||| |||||||| ||||||||||| ||||| ||||| || ||||||||||    
T  32487342 gagcggatgtttgcaccaatcatgataactgtagttaaatgacacatgttttgatttca 32487400  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 455 - 514
Target Start/End: Complemental strand, 31419637 - 31419578
Alignment:
Q  455 gagcggatgtttccaccaatcgtgataactgtaattaaacgacacctgatttgatttcaa 514  Q
    ||||||||||||||||||||||| |||| | |||||||||||||||| ||||| ||||||    
T  31419637 gagcggatgtttccaccaatcgtaataagtataattaaacgacacctaatttgttttcaa 31419578  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 513
Target Start/End: Complemental strand, 19298078 - 19298021
Alignment:
Q  456 agcggatgtttccaccaatcgtgataactgtaattaaacgacacctgatttgatttca 513  Q
    |||||||||||||||||||| |||||||||||  |||| |||| ||| || |||||||    
T  19298078 agcggatgtttccaccaatcatgataactgtagctaaatgacatctgtttcgatttca 19298021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 513
Target Start/End: Original strand, 31136097 - 31136146
Alignment:
Q  464 tttccaccaatcgtgataactgtaattaaacgacacctgatttgatttca 513  Q
    |||||||||||| |||||||||||| |||| | |||||| ||||||||||    
T  31136097 tttccaccaatcatgataactgtaactaaaagtcacctgttttgatttca 31136146  T

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Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 456 - 554
Target Start/End: Complemental strand, 34940373 - 34940276
Alignment:
Q  456 agcggatgtttccaccaatcgtgataactgtaattaaacgacacctgatttgatttcaatcacacgaaaataatatagcttcaccttatcaatgagaac 554  Q
    |||| |||||| |||||||||| ||||||| |||| ||||||||||| ||||||||||| |||| | ||| | | |||||| ||||| |||||||||||    
T  34940373 agcgaatgttttcaccaatcgtaataactgaaattgaacgacacctgttttgatttcaaccacaag-aaagagtttagcttaaccttgtcaatgagaac 34940276  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 456 - 514
Target Start/End: Original strand, 4825246 - 4825304
Alignment:
Q  456 agcggatgtttccaccaatcgtgataactgtaattaaacgacacctgatttgatttcaa 514  Q
    ||||| ||||||||||| |||| |||||||||  |||||||||||||||  ||||||||    
T  4825246 agcgggtgtttccaccagtcgtaataactgtacgtaaacgacacctgatgcgatttcaa 4825304  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 415 - 554
Target Start/End: Original strand, 13698800 - 13698938
Alignment:
Q  415 aaaacaacaaaaataattacatatgaacacttatatagaggagcggatgtttccaccaatcgtgataactgtaattaaacgacacctgatttgatttcaa 514  Q
    |||||||| ||||||||||||  || ||||  ||| | | |||||||||||||||||| || ||| |||||||| | || |||||||| ||||||||||     
T  13698800 aaaacaacgaaaataattacaagtggacacccatacacacgagcggatgtttccaccattcatgaaaactgtaactgaatgacacctgttttgatttcat 13698899  T
Q  515 tcacacgaaaataatatagcttcaccttatcaatgagaac 554  Q
     |||| | ||  |||  ||||| |||||||||||||||||    
T  13698900 ccacaag-aaggaattaagctttaccttatcaatgagaac 13698938  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 459 - 519
Target Start/End: Original strand, 11651082 - 11651142
Alignment:
Q  459 ggatgtttccaccaatcgtgataactgtaattaaacgacacctgatttgatttcaatcaca 519  Q
    |||||||||||||| || ||||||| ||||||||| ||| |||| |||| |||||| ||||    
T  11651082 ggatgtttccaccagtcatgataacagtaattaaaggacgcctgttttgctttcaaccaca 11651142  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 447 - 519
Target Start/End: Complemental strand, 26159793 - 26159721
Alignment:
Q  447 atatagaggagcggatgtttccaccaatcgtgataactgtaattaaacgacacctgatttgatttcaatcaca 519  Q
    ||||| |||||||||||||||||||| || |||||||| ||| |||| ||||| || | ||||||||| ||||    
T  26159793 atataaaggagcggatgtttccaccagtcatgataactataactaaatgacacatgttatgatttcaaccaca 26159721  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 517
Target Start/End: Original strand, 372330 - 372383
Alignment:
Q  464 tttccaccaatcgtgataactgtaattaaacgacacctgatttgatttcaatca 517  Q
    |||||||||||| ||||| |||||| |||| | |||||| ||||||||||||||    
T  372330 tttccaccaatcatgatagctgtaactaaaagtcacctgttttgatttcaatca 372383  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 455 - 512
Target Start/End: Complemental strand, 21458392 - 21458335
Alignment:
Q  455 gagcggatgtttccaccaatcgtgataactgtaattaaacgacacctgatttgatttc 512  Q
    |||||||||||| || ||||||| | |||||||   ||||||||||||||||||||||    
T  21458392 gagcggatgttttcatcaatcgtaaaaactgtatacaaacgacacctgatttgatttc 21458335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 513
Target Start/End: Original strand, 31395418 - 31395475
Alignment:
Q  456 agcggatgtttccaccaatcgtgataactgtaattaaacgacacctgatttgatttca 513  Q
    ||||| |||||||||||||||||||| |||||| |||| | | |||| ||||||||||    
T  31395418 agcgggtgtttccaccaatcgtgatagctgtaactaaatgtcgcctgttttgatttca 31395475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 513
Target Start/End: Original strand, 54824749 - 54824806
Alignment:
Q  456 agcggatgtttccaccaatcgtgataactgtaattaaacgacacctgatttgatttca 513  Q
    |||||||||||||||||||| |||||||||||  |||| |||| ||| || |||||||    
T  54824749 agcggatgtttccaccaatcatgataactgtagctaaatgacatctgtttcgatttca 54824806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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