View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5110_low_30 (Length: 396)

Name: NF5110_low_30
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5110_low_30
NF5110_low_30
[»] chr7 (11 HSPs)
chr7 (15-222)||(31166861-31167068)
chr7 (14-218)||(21971546-21971750)
chr7 (15-124)||(27596384-27596493)
chr7 (126-212)||(27595999-27596084)
chr7 (114-224)||(32741787-32741897)
chr7 (114-222)||(28750927-28751034)
chr7 (114-222)||(38916392-38916500)
chr7 (136-222)||(21972092-21972177)
chr7 (114-218)||(27230474-27230578)
chr7 (116-193)||(15577501-15577578)
chr7 (110-150)||(21948168-21948208)
[»] chr2 (8 HSPs)
chr2 (15-222)||(39865205-39865412)
chr2 (14-222)||(29770774-29770982)
chr2 (15-222)||(4329606-4329814)
chr2 (136-222)||(4330136-4330221)
chr2 (114-222)||(9074605-9074713)
chr2 (114-222)||(30674429-30674537)
chr2 (114-218)||(9914204-9914308)
chr2 (136-200)||(29771299-29771362)
[»] chr8 (5 HSPs)
chr8 (14-222)||(26759211-26759419)
chr8 (41-221)||(146644-146825)
chr8 (114-222)||(186682-186790)
chr8 (114-222)||(308312-308420)
chr8 (136-199)||(147190-147252)
[»] chr3 (7 HSPs)
chr3 (14-222)||(23566795-23567003)
chr3 (14-222)||(39737630-39737838)
chr3 (114-198)||(30385749-30385833)
chr3 (136-200)||(39737230-39737293)
chr3 (136-200)||(23566459-23566522)
chr3 (114-198)||(53153855-53153939)
chr3 (114-220)||(785770-785876)
[»] chr5 (4 HSPs)
chr5 (14-222)||(39121740-39121948)
chr5 (114-222)||(14393983-14394091)
chr5 (114-222)||(25672272-25672380)
chr5 (115-222)||(20983551-20983658)
[»] chr4 (13 HSPs)
chr4 (15-222)||(12639628-12639835)
chr4 (41-225)||(28103803-28103988)
chr4 (108-222)||(38147399-38147513)
chr4 (134-222)||(917684-917772)
chr4 (21-75)||(918696-918750)
chr4 (114-198)||(23643434-23643518)
chr4 (136-201)||(28104360-28104424)
chr4 (114-222)||(43012762-43012870)
chr4 (136-198)||(12639211-12639273)
chr4 (136-199)||(919115-919177)
chr4 (114-198)||(54714873-54714957)
chr4 (112-143)||(918651-918682)
chr4 (105-150)||(23037993-23038038)
[»] chr1 (1 HSPs)
chr1 (114-195)||(40888819-40888900)
[»] chr6 (5 HSPs)
chr6 (114-222)||(604985-605096)
chr6 (331-380)||(31090032-31090081)
chr6 (114-222)||(8700896-8701004)
chr6 (114-198)||(12307301-12307385)
chr6 (114-198)||(7727381-7727465)
[»] scaffold0009 (2 HSPs)
scaffold0009 (103-147)||(4021-4065)
scaffold0009 (103-147)||(4402-4446)


Alignment Details
Target: chr7 (Bit Score: 184; Significance: 2e-99; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 31166861 - 31167068
Alignment:
Q  15 cagagagataatagatagcagtcatatggttgtgtaaacagatggaatggaaaggacgcgtctctataataatggttgtgcatttgaatattgaaagagt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  31166861 cagagagataatagatagcagtcatatggttgtgtaaacagatggaatggaaaggacgcgtctctataataattgttgtgcctttgaatattgaaagagt 31166960  T
Q  115 attgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgtt 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||  |||||||||||    
T  31166961 attgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtgagattcatttatttaattactatttattgtt 31167060  T
Q  215 ccttatcc 222  Q
    ||||||||    
T  31167061 ccttatcc 31167068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 14 - 218
Target Start/End: Complemental strand, 21971750 - 21971546
Alignment:
Q  14 gcagagagataatagatagca-gtcatatggttgtgtaaacagatggaatggaaaggacgcgtctctataataatggttgtgcatttgaatattgaaaga 112  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||| ||| |    
T  21971750 gcagagagataatagatagcaagtcatatggttgtgtaaacagatggaatggaaaggacgcgtctgcataataatggttgtgcctttgaatattaaaaaa 21971651  T
Q  113 gtattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||| ||||||||||    
T  21971650 gtattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgagttaagtgagat-catttatttaattattatttattg 21971552  T
Q  213 ttcctt 218  Q
    ||||||    
T  21971551 ttcctt 21971546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 27596493 - 27596384
Alignment:
Q  15 cagagagataatagatagcagtcatatggttgtgtaaacagatggaatggaaaggacgcgtctctataataatggttgtgcatttgaatattgaaagagt 114  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||| ||| | ||||| | ||||||||| || |||| |||||  |||||||||||    
T  27596493 cagagagataatagataacagtcatatggttatgtaaacagatggaatgaaaaaggcgcgtttgtataataatagtcgtgcctttgagaattgaaagagt 27596394  T
Q  115 attgaatata 124  Q
    ||||||||||    
T  27596393 attgaatata 27596384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 126 - 212
Target Start/End: Complemental strand, 27596084 - 27595999
Alignment:
Q  126 cttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattg 212  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||| | | |||||||||    
T  27596084 cttttattatttttaattagttgac-tatattacactttaattgagatgaattaagtgagatccatttatttattggctatttattg 27595999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 114 - 224
Target Start/End: Original strand, 32741787 - 32741897
Alignment:
Q  114 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgt 213  Q
    ||||||||||||| ||||||| |||||| ||||||| |||| ||||||||||||| || | ||  |||| ||||||||||||||| |  |||||||||||    
T  32741787 tattgaatatagcatttattaattttaaatagttgaaatattttatactttaattaaggtaaaccaagtgagatccatttatttattgcttatttattgt 32741886  T
Q  214 tccttatcccg 224  Q
    || ||||||||    
T  32741887 tcattatcccg 32741897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 114 - 222
Target Start/End: Original strand, 28750927 - 28751034
Alignment:
Q  114 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgt 213  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||| ||||||||| || | || ||||| ||||||||||||||| |   ||||||||||    
T  28750927 tattgaatata-catttattaattttaattagttgaaatattttacactttaattaaggtaaactaagtgagatccatttatttattgcctatttattgt 28751025  T
Q  214 tccttatcc 222  Q
    |||||||||    
T  28751026 tccttatcc 28751034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 114 - 222
Target Start/End: Original strand, 38916392 - 38916500
Alignment:
Q  114 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgt-tatttattg 212  Q
    |||| |||||| | ||||||| |||||||||||||| |||| ||| ||||||||| || | ||| |||| |||||||||||||| ||||| |||||||||    
T  38916392 tattaaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaatcaagtgagatccatttattt-attgtctatttattg 38916490  T
Q  213 ttccttatcc 222  Q
    ||| ||||||    
T  38916491 ttctttatcc 38916500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 136 - 222
Target Start/End: Original strand, 21972092 - 21972177
Alignment:
Q  136 ttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgttccttatcc 222  Q
    ||||||||||||||||||| ||| | ||||||| ||||||||||||| |||| ||||||||||||   | || ||||||||||||||    
T  21972092 ttttaattagttgacatattttaca-tttaattaagatgaattaagtgagattcatttatttaatgcattttaattgttccttatcc 21972177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 218
Target Start/End: Complemental strand, 27230578 - 27230474
Alignment:
Q  114 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgt-tatttattg 212  Q
    ||||||||||||| ||||||| |||||||||||||| |||| ||| ||||||||| || | ||| || | |||| ||||||||| ||||| |||| ||||    
T  27230578 tattgaatatagcatttattaattttaattagttgaaatattttacactttaattaaggtaaatcaaatgagattcatttattt-attgtctattaattg 27230480  T
Q  213 ttcctt 218  Q
    ||||||    
T  27230479 ttcctt 27230474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 116 - 193
Target Start/End: Complemental strand, 15577578 - 15577501
Alignment:
Q  116 ttgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccattt 193  Q
    ||||||||| | ||||||| |||||||||||||| |||| ||| ||||||||| || | || ||||| ||||||||||    
T  15577578 ttgaatatatcatttattaattttaattagttgaaatattttacactttaattaaggtaaactaagtgagatccattt 15577501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 21948208 - 21948168
Alignment:
Q  110 agagtattgaatatagcttttattatttttaattagttgac 150  Q
    ||||||||||||| || |||||||| |||||||||||||||    
T  21948208 agagtattgaatagagtttttattaattttaattagttgac 21948168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 184; Significance: 2e-99; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 39865205 - 39865412
Alignment:
Q  15 cagagagataatagatagcagtcatatggttgtgtaaacagatggaatggaaaggacgcgtctctataataatggttgtgcatttgaatattgaaagagt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  39865205 cagagagataatagatagcagtcatatggttgtgtaaacagatggaatggaaaggacgcgtctctataataattgttgtgcctttgaatattgaaagagt 39865304  T
Q  115 attgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgtt 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||  |||||||||||    
T  39865305 attgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtgagattcatttatttaattactatttattgtt 39865404  T
Q  215 ccttatcc 222  Q
    ||||||||    
T  39865405 ccttatcc 39865412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 14 - 222
Target Start/End: Complemental strand, 29770982 - 29770774
Alignment:
Q  14 gcagagagataatagatagcagtcatatggttgtgtaaacagatggaatggaaaggacgcgtctctataataatggttgtgcatttgaatattgaaagag 113  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||    
T  29770982 gcagagagataatatatagcagtcatatggtggtgtaaacagatggaatggaaaggacgcgtctctgtaataatggttatgcctttgaatattgaaagag 29770883  T
Q  114 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgt 213  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||  ||||||||||    
T  29770882 tattgattatagcttttattatttttaattagttgacatatattatactttaactgagatgaattaagtgagattcatttatttaattactatttattgt 29770783  T
Q  214 tccttatcc 222  Q
    |||||||||    
T  29770782 tccttatcc 29770774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 15 - 222
Target Start/End: Complemental strand, 4329814 - 4329606
Alignment:
Q  15 cagagagataatagatagcagtcatatggttgtgtaaacagatggaatggaaaggac-gcgtctctataataatggttgtgcatttgaatattgaaagag 113  Q
    |||||| ||||||||||||| ||||||| || |||||||| |||||||||||||||| |||| | ||| ||||| ||||||| |||||  ||||||||||    
T  4329814 cagagaaataatagatagcaatcatatgattctgtaaacatatggaatggaaaggaccgcgtatgtatgataatagttgtgcctttgagaattgaaagag 4329715  T
Q  114 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||| |   |||||| |||    
T  4329714 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatctatttatttattaactatttactgt 4329615  T
Q  214 tccttatcc 222  Q
    |||||||||    
T  4329614 tccttatcc 4329606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 136 - 222
Target Start/End: Original strand, 4330136 - 4330221
Alignment:
Q  136 ttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgttccttatcc 222  Q
    |||||||||||| |||||| ||| | ||||||||||||||||||||| |||||||||||||||||   |||| ||||||||||||||    
T  4330136 ttttaattagttaacatattttaca-tttaattgagatgaattaagtgagatccatttatttaatgcatattaattgttccttatcc 4330221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 114 - 222
Target Start/End: Complemental strand, 9074713 - 9074605
Alignment:
Q  114 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgt-tatttattg 212  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||| ||||||||| || | ||  |||| ||||||||||||||| |||| |||||||||    
T  9074713 tattgaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaaccaagtgagatccatttattta-ttgtctatttattg 9074615  T
Q  213 ttccttatcc 222  Q
    ||| ||||||    
T  9074614 ttctttatcc 9074605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 114 - 222
Target Start/End: Original strand, 30674429 - 30674537
Alignment:
Q  114 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgt 213  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||| | ||||||| |||| ||| |||| ||||| ||||||||| |  ||||| |||||    
T  30674429 tattgaatataacatttattaattttaattagttgaaatattttacattttaattaagataaatcaagtgagatctatttatttattgcttattaattgt 30674528  T
Q  214 tccttatcc 222  Q
    || ||||||    
T  30674529 tctttatcc 30674537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 114 - 218
Target Start/End: Complemental strand, 9914308 - 9914204
Alignment:
Q  114 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgt 213  Q
    ||||||||||||| ||||||| ||||| |||||||| |||| ||| ||||||||| |  | ||| |||| |||| |||||||||| |   ||||||||||    
T  9914308 tattgaatatagcatttattaattttagttagttgaaatattttacactttaattaaagtaaatcaagtgagattcatttatttattacctatttattgt 9914209  T
Q  214 tcctt 218  Q
    |||||    
T  9914208 tcctt 9914204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 29771299 - 29771362
Alignment:
Q  136 ttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaat 200  Q
    ||||||||||||||||||| ||| | | ||||||||||||||||||| |||| ||||||||||||    
T  29771299 ttttaattagttgacatattttaca-tataattgagatgaattaagtgagattcatttatttaat 29771362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 177; Significance: 3e-95; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 14 - 222
Target Start/End: Complemental strand, 26759419 - 26759211
Alignment:
Q  14 gcagagagataatagatagcagtcatatggttgtgtaaacagatggaatggaaaggacgcgtctctataataatggttgtgcatttgaatattgaaagag 113  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  26759419 gcagagagataatagataacagtcatatggttgtgtaaacagatggaatggaaaggacgcgtctctataataatggttgtgcctttgaatattaaaagag 26759320  T
Q  114 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgt 213  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||    
T  26759319 tatttaatatagcttttattatttttaattagttggcatatattatactttaattgagatgaattaagtgagatccatttatttaattactatttattgt 26759220  T
Q  214 tccttatcc 222  Q
    |||||||||    
T  26759219 tccttatcc 26759211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 41 - 221
Target Start/End: Complemental strand, 146825 - 146644
Alignment:
Q  41 tggttgtgtaaacagatggaatggaaaggacgcgtctctataataatggttgtgcatttgaatattgaaa-gagtattgaatatagcttttattattttt 139  Q
    ||||||| ||||||||||||||||||| ||||||| | ||||||||| || |||  |||||  ||||||| ||||||||||||||| |||||||| ||||    
T  146825 tggttgtataaacagatggaatggaaatgacgcgtttgtataataatagtcgtggctttgagaattgaaaagagtattgaatatagtttttattaatttt 146726  T
Q  140 aattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgttccttatc 221  Q
    ||||||||||||||||||| |||||||||||||| ||| |||| ||||||||||||||||| | |||||||||||| |||||    
T  146725 aattagttgacatatattacactttaattgagattaataaagtgagatccatttatttaatggctatttattgttcattatc 146644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 114 - 222
Target Start/End: Complemental strand, 186790 - 186682
Alignment:
Q  114 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgt 213  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||| | ||||||| |||| ||| |||| ||||||||||||||| | | ||||||||||    
T  186790 tattgaatataacatttattaattttaattagttgaaatattttacaatttaattaagataaatcaagtgagatccatttatttattagctatttattgt 186691  T
Q  214 tccttatcc 222  Q
    |||||||||    
T  186690 tccttatcc 186682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 114 - 222
Target Start/End: Complemental strand, 308420 - 308312
Alignment:
Q  114 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgt 213  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||| ||||||||| || | || ||||| ||||||||||||||| |   ||||||||||    
T  308420 tattgaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaactaagtgagatccatttatttattgcctatttattgt 308321  T
Q  214 tccttatcc 222  Q
    || ||||||    
T  308320 tcattatcc 308312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 199
Target Start/End: Original strand, 147190 - 147252
Alignment:
Q  136 ttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaa 199  Q
    ||||||||||||||||||| ||||| ||||||| ||||||||||||| |||||||| |||||||    
T  147190 ttttaattagttgacatattttata-tttaattaagatgaattaagtgagatccatatatttaa 147252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 169; Significance: 2e-90; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 14 - 222
Target Start/End: Original strand, 23566795 - 23567003
Alignment:
Q  14 gcagagagataatagatagcagtcatatggttgtgtaaacagatggaatggaaaggacgcgtctctataataatggttgtgcatttgaatattgaaagag 113  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||    
T  23566795 gcagatagataatagatagcagtcatatggttgtttaaacagatggaatggaaaggatgcgtctctataataattgttgtgcctttgaatattgaaagag 23566894  T
Q  114 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||  ||||||||||    
T  23566895 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtgatattcatttatttaattactatttattgt 23566994  T
Q  214 tccttatcc 222  Q
    |||||||||    
T  23566995 tccttatcc 23567003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 14 - 222
Target Start/End: Original strand, 39737630 - 39737838
Alignment:
Q  14 gcagagagataatagatagcagtcatatggttgtgtaaacagatggaatggaaaggacgcgtctctataataatggttgtgcatttgaatattgaaagag 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| | ||| ||||||||||||     
T  39737630 gcagagagataatagatagcagtcatatggttgtgtaaacagatggaatggaaaggacacgtctctatattaatggttgtacctttaaatattgaaagaa 39737729  T
Q  114 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgt 213  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||| ||||||||||||  ||||||||||    
T  39737730 tattgaatatagcttttattatttttaattagttaacatatattatattttaattgagatgaattaaataagatctatttatttaattactatttattgt 39737829  T
Q  214 tccttatcc 222  Q
    |||||||||    
T  39737830 tccttatcc 39737838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 114 - 198
Target Start/End: Original strand, 30385749 - 30385833
Alignment:
Q  114 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttattta 198  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||| ||||||||| || | ||| || | |||||||||||||||    
T  30385749 tattgaatatatcatttattaattttaattagttgaaatattttacactttaattaaggtaaatcaaatgagatccatttattta 30385833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 39737293 - 39737230
Alignment:
Q  136 ttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaat 200  Q
    ||||||||||||||||||| ||| | ||||||||||||| ||||||| |||| ||||||||||||    
T  39737293 ttttaattagttgacatattttaca-tttaattgagatggattaagtgagattcatttatttaat 39737230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 23566522 - 23566459
Alignment:
Q  136 ttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaat 200  Q
    ||||||||||||||||||  ||| | |||| |||||||||||||||||||||  |||||||||||    
T  23566522 ttttaattagttgacatagtttaca-tttatttgagatgaattaagtaagatttatttatttaat 23566459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 198
Target Start/End: Original strand, 53153855 - 53153939
Alignment:
Q  114 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttattta 198  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||| ||||||||| || | ||| |||| |||| ||| ||||||    
T  53153855 tattgaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaatcaagtgagattcatctattta 53153939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 220
Target Start/End: Original strand, 785770 - 785876
Alignment:
Q  114 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgt 213  Q
    |||||||||||||  |||||| ||||||||| |||  |||| ||| ||||| ||| || | ||| |||| ||||||||||||||| |   |||||| |||    
T  785770 tattgaatatagcaattattaattttaattaattgcaatattttacactttgattaaggtaaatcaagtgagatccatttatttattgcctatttaatgt 785869  T
Q  214 tccttat 220  Q
    |||||||    
T  785870 tccttat 785876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 165; Significance: 4e-88; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 14 - 222
Target Start/End: Original strand, 39121740 - 39121948
Alignment:
Q  14 gcagagagataatagatagcagtcatatggttgtgtaaacagatggaatggaaaggacgcgtctctataataatggttgtgcatttgaatattgaaagag 113  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||    
T  39121740 gcagagagatgatagatagcagtcatacggttgtgtaaacagatggaatggaaatgacgcgtctctataataatggttgtgcctttgaatatcgaaagag 39121839  T
Q  114 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgt 213  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||  ||||||||||    
T  39121840 tattgaatataacttttattatttttaattagttgacatatattatactttaattgagataaattaagtgagattcatttatttaattactatttattgt 39121939  T
Q  214 tccttatcc 222  Q
    |||||||||    
T  39121940 tccttatcc 39121948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 114 - 222
Target Start/End: Complemental strand, 14394091 - 14393983
Alignment:
Q  114 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgt 213  Q
    ||||||||||||| |||||||  ||||||||||||| |||| ||| | ||||||| |||| ||| |||| ||||||||||||||| |  |||||||||||    
T  14394091 tattgaatatagcatttattaaatttaattagttgaaatattttacattttaattaagataaatcaagtgagatccatttatttattgcttatttattgt 14393992  T
Q  214 tccttatcc 222  Q
    |||||||||    
T  14393991 tccttatcc 14393983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 114 - 222
Target Start/End: Complemental strand, 25672380 - 25672272
Alignment:
Q  114 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgt 213  Q
    |||| |||||||| ||||||| |||||||||||||| |||| ||| ||||||||| | || ||  |||| ||||||||||||||| |   |||| |||||    
T  25672380 tattaaatatagcatttattaattttaattagttgaaatattttacactttaattaatataaaccaagtgagatccatttatttattgcatattcattgt 25672281  T
Q  214 tccttatcc 222  Q
    |||||||||    
T  25672280 tccttatcc 25672272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 222
Target Start/End: Complemental strand, 20983658 - 20983551
Alignment:
Q  115 attgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgt-tatttattgt 213  Q
    |||||||||| | ||||||| |||||||||||||| |||| ||| ||||||||| || | ||  || | |||||||||||||| ||||| |||||||| |    
T  20983658 attgaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaaccaaatgagatccatttattt-attgtctatttatttt 20983560  T
Q  214 tccttatcc 222  Q
    | |||||||    
T  20983559 ttcttatcc 20983551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 140; Significance: 3e-73; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 12639628 - 12639835
Alignment:
Q  15 cagagagataatagatagcagtcatatggttgtgtaaacagatggaatggaaaggacgcgtctctataataatggttgtgcatttgaatattgaaagagt 114  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |  || | |||||  |||||||||||    
T  12639628 cagagagataatagatagcaatcatatggttgtgtaaacagatggaatggaaaggatgcgtctctataataatagacgtacctttgagaattgaaagagt 12639727  T
Q  115 attgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgtt 214  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||| ||||||||||||||| |   |||||||||||    
T  12639728 attgaatatagcttttattatttttaattagttgacatattttacactttaattgaggtgaattaagtgagatccatttatttattgcctatttattgtt 12639827  T
Q  215 ccttatcc 222  Q
    ||||||||    
T  12639828 ccttatcc 12639835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 41 - 225
Target Start/End: Complemental strand, 28103988 - 28103803
Alignment:
Q  41 tggttgtgtaaacagatggaatggaaaggacgcgtctctataataatggttgtgcatttgaatattg-aaagagtattgaatatagcttttattattttt 139  Q
    ||||||||| ||||  ||||||||||||||||||| | ||||||||| || |||| |||||  |||| ||||||||||||||||||||||||||||||||    
T  28103988 tggttgtgtgaacatgtggaatggaaaggacgcgtttgtataataatagtcgtgcctttgagaattggaaagagtattgaatatagcttttattattttt 28103889  T
Q  140 aattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgttccttatcccgt 225  Q
    ||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||||||    
T  28103888 aattagttgacatatattacactctaattgagatgaattaagtgagatccatttatttaatgattatttattgttccttatcccgt 28103803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 108 - 222
Target Start/End: Complemental strand, 38147513 - 38147399
Alignment:
Q  108 aaagagtattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |   ||||    
T  38147513 aaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatccatttatttattgactatt 38147414  T
Q  208 tattgttccttatcc 222  Q
    || ||||||||||||    
T  38147413 tactgttccttatcc 38147399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 134 - 222
Target Start/End: Complemental strand, 917772 - 917684
Alignment:
Q  134 atttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgttccttatcc 222  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| | |||| |||||||||| |   |||||||||||| ||||||    
T  917772 atttttaattagttgacatatattacactttaattgagatgaattaacttagattcatttatttattgactatttattgttctttatcc 917684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 918750 - 918696
Alignment:
Q  21 gataatagatagcagtcatatggttgtgtaaacagatggaatggaaaggacgcgt 75  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  918750 gataatagatagcagtcatatgattgtgtcaacagatggaatggaaaggacgcgt 918696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 114 - 198
Target Start/End: Complemental strand, 23643518 - 23643434
Alignment:
Q  114 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttattta 198  Q
    ||||||||||||| ||||||| |||||||||||||| |||| ||| ||||||||| |||| ||| |||| ||||| |||||||||    
T  23643518 tattgaatatagcatttattaattttaattagttgaaatattttacactttaattaagataaatgaagtgagatcaatttattta 23643434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 28104360 - 28104424
Alignment:
Q  136 ttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaatt 201  Q
    |||||||||||||| |||| ||| | ||||||||||||||||||||| ||||||||||||||||||    
T  28104360 ttttaattagttgatatattttaca-tttaattgagatgaattaagtgagatccatttatttaatt 28104424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 114 - 222
Target Start/End: Complemental strand, 43012870 - 43012762
Alignment:
Q  114 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgt-tatttattg 212  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||| ||||||||| || | ||  || | |||||||||||||| ||||| |||||||||    
T  43012870 tattgaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaaccaaatgagatccatttattt-attgtctatttattg 43012772  T
Q  213 ttccttatcc 222  Q
    ||||||||||    
T  43012771 ttccttatcc 43012762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 136 - 198
Target Start/End: Complemental strand, 12639273 - 12639211
Alignment:
Q  136 ttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttattta 198  Q
    ||||||||||||||||||| ||| || ||||||||| | |||||||| |||||||||||||||    
T  12639273 ttttaattagttgacatattttacacattaattgaggtaaattaagtgagatccatttattta 12639211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 199
Target Start/End: Original strand, 919115 - 919177
Alignment:
Q  136 ttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaa 199  Q
    |||||||||||||| |||| ||| | ||||||||||||||||||||| |||| |||||||||||    
T  919115 ttttaattagttgatatattttaca-tttaattgagatgaattaagtgagattcatttatttaa 919177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 198
Target Start/End: Original strand, 54714873 - 54714957
Alignment:
Q  114 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttattta 198  Q
    ||||||||||| | ||||||| ||||||||| || | |||| ||| ||||||||| |||| ||| |||| | |||||||||||||    
T  54714873 tattgaatataacatttattaattttaattatttaaaatattttacactttaattaagataaatcaagtgaaatccatttattta 54714957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 112 - 143
Target Start/End: Complemental strand, 918682 - 918651
Alignment:
Q  112 agtattgaatatagcttttattatttttaatt 143  Q
    ||||||||||||||||||||||||||||||||    
T  918682 agtattgaatatagcttttattatttttaatt 918651  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 23037993 - 23038038
Alignment:
Q  105 ttgaaagagtattgaatatagcttttattatttttaattagttgac 150  Q
    |||| ||||||||||||| | ||||||||| |||||||||||||||    
T  23037993 ttgagagagtattgaatacaacttttattaattttaattagttgac 23038038  T

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Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 114 - 195
Target Start/End: Complemental strand, 40888900 - 40888819
Alignment:
Q  114 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttat 195  Q
    ||||||||||||| ||||||| |||||||||||||| |||| ||| ||||||||| |||| ||| |||| ||||||||||||    
T  40888900 tattgaatatagcatttattaattttaattagttgaaatattttacactttaattaagataaatcaagttagatccatttat 40888819  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 114 - 222
Target Start/End: Complemental strand, 605096 - 604985
Alignment:
Q  114 tattgaatatagcttttattatttttaatta---gttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttat 210  Q
    ||||||||||| | ||||||| |||||||||   ||||| |||| ||||||||||||| || | ||| |||| ||||||||||||||| |   |||||||    
T  605096 tattgaatataacatttattaattttaattattagttgaaatattttatactttaattaaggtaaatcaagtgagatccatttatttattgcctatttat 604997  T
Q  211 tgttccttatcc 222  Q
    ||||||||||||    
T  604996 tgttccttatcc 604985  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 331 - 380
Target Start/End: Complemental strand, 31090081 - 31090032
Alignment:
Q  331 atgaagtttaattaaatattagactaaagacggtaagatatttatcaaaa 380  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  31090081 atgaggtttaattaaatattagactaaagacgataagatatttatcaaaa 31090032  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 114 - 222
Target Start/End: Complemental strand, 8701004 - 8700896
Alignment:
Q  114 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttatttaattgttatttattgt 213  Q
    ||||||||||| | ||||||| |||||||||||| | |||| ||| ||||||||| || | ||| |||| |||||||| |||||| |   ||||||||||    
T  8701004 tattgaatataacatttattaattttaattagttaaaatattttacactttaattaaggtaaatcaagtgagatccatctatttattgcctatttattgt 8700905  T
Q  214 tccttatcc 222  Q
    |||||||||    
T  8700904 tccttatcc 8700896  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 114 - 198
Target Start/End: Original strand, 12307301 - 12307385
Alignment:
Q  114 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttattta 198  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||| ||||||||| |||| ||| |||| ||||| |||||||||    
T  12307301 tattgaatataacatttattaattttaattagttgaaatattttacactttaattaagataaatcaagtgagatctatttattta 12307385  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 198
Target Start/End: Original strand, 7727381 - 7727465
Alignment:
Q  114 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtaagatccatttattta 198  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||| ||||||||| || | ||  |||| ||||| |||||||||    
T  7727381 tattgaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaaccaagtgagatcaatttattta 7727465  T

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Target: scaffold0009 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 4021 - 4065
Alignment:
Q  103 tattgaaagagtattgaatatagcttttattatttttaattagtt 147  Q
    |||||| | ||||||||||||| ||||||||| ||||||||||||    
T  4021 tattgagaaagtattgaatatatcttttattaattttaattagtt 4065  T

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Target: scaffold0009; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 4402 - 4446
Alignment:
Q  103 tattgaaagagtattgaatatagcttttattatttttaattagtt 147  Q
    |||||| | ||||||||||||| ||||||||| ||||||||||||    
T  4402 tattgagaaagtattgaatatatcttttattaattttaattagtt 4446  T

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