View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5110_low_34 (Length: 386)
Name: NF5110_low_34
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 14 - 371
Target Start/End: Original strand, 36209141 - 36209498
Alignment:
| Q |
14 |
attacaatcaagtttataaggaataaagaaaaaataatttcacaacccaactcatggcataattagataactgataaaaacaaagacaatgtctctcgaa |
113 |
Q |
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| T |
36209141 |
attacaatcaagtttataaggaataaagaaaaaataatttcacaaaccaaatcatggcataattagataactgataaaaacaaagacaatgtctctccaa |
36209240 |
T |
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| Q |
114 |
agtctttaatctctattcttcaagtaagaagaatctaggtttacaggataaagatcagtagttactgaagaagatgaagcagtccatggcccttccattg |
213 |
Q |
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| T |
36209241 |
agtctttaatctctattcttcaagtaagaagaatctaggtttacaggataaagatcagtagttactgaagaagatgaagcagtccatggcccttccattg |
36209340 |
T |
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| Q |
214 |
aaatactattgtcttggtaatgttttctcattgcttccattttcttctcatccaatacttcacttgactctaaaaccagctcctgaatagcaatttttcc |
313 |
Q |
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| T |
36209341 |
aaatactttggtcttggtaatgttttctcattgcttccattttcttctcatccaatacctcacttgattctaaaaccagttcttgaatagcaattttacc |
36209440 |
T |
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| Q |
314 |
ttctaacatgcttaccactgaagacattgctggcctaagtgatgaagtcacattagtg |
371 |
Q |
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| T |
36209441 |
ttctaacatgcttaccactgaagacattgctggcctaagtgatgaagtcacattagtg |
36209498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 289
Target Start/End: Original strand, 31241579 - 31241631
Alignment:
| Q |
237 |
tttctcattgcttccattttcttctcatccaatacttcacttgactctaaaac |
289 |
Q |
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| T |
31241579 |
tttctcattgcttccaactttttctcatccattacttcacttgaatctgaaac |
31241631 |
T |
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