View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5110_low_35 (Length: 384)

Name: NF5110_low_35
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5110_low_35
NF5110_low_35
[»] chr4 (11 HSPs)
chr4 (18-366)||(9593411-9593760)
chr4 (18-366)||(9581630-9581967)
chr4 (18-366)||(9587325-9587662)
chr4 (18-366)||(9602207-9602569)
chr4 (178-366)||(9569285-9569473)
chr4 (1-193)||(9569616-9569805)
chr4 (18-116)||(9606092-9606190)
chr4 (125-238)||(37898132-37898245)
chr4 (264-366)||(54294963-54295065)
chr4 (170-237)||(54291085-54291150)
chr4 (316-366)||(9571884-9571934)
[»] chr6 (13 HSPs)
chr6 (116-366)||(29131401-29131650)
chr6 (255-365)||(29012926-29013036)
chr6 (127-363)||(32740477-32740696)
chr6 (264-366)||(29152012-29152114)
chr6 (273-366)||(34282011-34282104)
chr6 (264-363)||(29124244-29124343)
chr6 (264-366)||(29137375-29137477)
chr6 (264-366)||(34278330-34278432)
chr6 (264-366)||(32960616-32960718)
chr6 (118-230)||(29145525-29145637)
chr6 (289-351)||(19697377-19697439)
chr6 (260-350)||(34258133-34258223)
chr6 (264-326)||(25519875-25519937)
[»] chr7 (2 HSPs)
chr7 (116-366)||(42446430-42446680)
chr7 (264-366)||(7793913-7794015)
[»] scaffold0054 (2 HSPs)
scaffold0054 (115-366)||(39551-39803)
scaffold0054 (115-225)||(33200-33311)
[»] scaffold0134 (1 HSPs)
scaffold0134 (117-362)||(15966-16206)
[»] scaffold0613 (1 HSPs)
scaffold0613 (116-361)||(295-534)
[»] chr5 (2 HSPs)
chr5 (192-239)||(32643169-32643216)
chr5 (192-234)||(43323012-43323054)


Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 366
Target Start/End: Original strand, 9593411 - 9593760
Alignment:
Q  18 gatgagccaaaaacagaaccacataagcatcagcgacgatacaaggataatggcccgctaccgattaaagcaatctccagga-ttccagtagacaagaca 116  Q
    ||||||| ||||||| |||||||||||||| ||| || |||||||||||||| ||||||||||||| ||||||||||  ||| ||||| | |||||||||    
T  9593411 gatgagcaaaaaacaaaaccacataagcatgagcaacaatacaaggataatgacccgctaccgattcaagcaatctcagggaattccaattgacaagaca 9593510  T
Q  117 ctttgcatacaaggtaatatcccaatcaccataatcattttgctcctggtgaaaacaagaaaaataactaattacttattcctccaattggaagaatgtt 216  Q
    |||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  9593511 ctttgcatacaaggtaatattccaatcaccacgatcattttgctcctggtgaaaacaaggaaaataactaattacttattcctccaattggaagaatgtt 9593610  T
Q  217 ttccttgtacattactatccgatcaatggaattcacttctttgtaagcaagctccacaatcatttgagtacttaaatcaaaacaaactagctctttatct 316  Q
    ||||||||| |||| |||||||||||| |||||||||| |||| ||||||||| ||||||| |||||||| ||||||||| ||||||||| |||||||||    
T  9593611 ttccttgtatattaatatccgatcaatagaattcacttttttgcaagcaagcttcacaatcgtttgagtatttaaatcaagacaaactagttctttatct 9593710  T
Q  317 tttctgatgacgaatatttctccttttgtccccactccgataggacgctc 366  Q
    | |||||||| ||||||||||||||| || ||||||||||| ||||||||    
T  9593711 tctctgatgaagaatatttctcctttcgtacccactccgatgggacgctc 9593760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 366
Target Start/End: Original strand, 9581630 - 9581967
Alignment:
Q  18 gatgagccaaaaacagaaccacataagcatcagcgacgatacaaggataatggcccgctaccgattaaagcaatctccaggattccagtagacaagacac 117  Q
    |||||||||||| |||||||||| || |||||||||||||||||||| ||||||| |||||||||| |||| |||||  | |||| | | ||||||||||    
T  9581630 gatgagccaaaa-cagaaccacagaatcatcagcgacgatacaaggacaatggcctgctaccgattcaagcgatctctggaattcaaattgacaagacac 9581728  T
Q  118 tttgcatacaaggtaatatcccaatcaccataatcattttgctcctggtgaaaacaagaaaaataactaattacttattcctccaattggaagaatgttt 217  Q
    |||| ||| ||||||||||||||||||||| ||||||||| ||||||||         ||||||||||||||||||||||||||||||||||||||||||    
T  9581729 tttgtatataaggtaatatcccaatcaccacaatcattttactcctggt---------aaaaataactaattacttattcctccaattggaagaatgttt 9581819  T
Q  218 tccttgtacattactatccgatcaatggaattcacttctttgtaagcaagctccacaatcatttgagtacttaaatcaaaacaaactagctctttatctt 317  Q
     ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  9581820 -ccttgtacattactatccgatcaatagaattcacttctttgtaagcaagctccacaatcatttgagtacttaaatcaagacaaactagttctttatctt 9581918  T
Q  318 ttctgatgacgaatatttctccttttgtccccactccgataggacgctc 366  Q
     |||||||||||||||||||||||| || |||||||| |||||||||||    
T  9581919 gtctgatgacgaatatttctcctttcgttcccactccaataggacgctc 9581967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 366
Target Start/End: Original strand, 9587325 - 9587662
Alignment:
Q  18 gatgagccaaaaacagaaccacataagcatcagcgacgatacaaggataatggcccgctaccgattaaagcaatctccaggattccagtagacaagacac 117  Q
    |||||||||||| |||||||||| || |||||||||||||||||||| ||||||| |||||||||| |||| |||||  | |||| | | ||||||||||    
T  9587325 gatgagccaaaa-cagaaccacagaatcatcagcgacgatacaaggacaatggcctgctaccgattcaagcgatctctggaattcaaattgacaagacac 9587423  T
Q  118 tttgcatacaaggtaatatcccaatcaccataatcattttgctcctggtgaaaacaagaaaaataactaattacttattcctccaattggaagaatgttt 217  Q
    |||| ||| ||||||||||||||||||||| ||||||||| ||||||||         ||||||||||||||||||||||||||||||||||||||||||    
T  9587424 tttgtatataaggtaatatcccaatcaccacaatcattttactcctggt---------aaaaataactaattacttattcctccaattggaagaatgttt 9587514  T
Q  218 tccttgtacattactatccgatcaatggaattcacttctttgtaagcaagctccacaatcatttgagtacttaaatcaaaacaaactagctctttatctt 317  Q
     ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  9587515 -ccttgtacattactatccgatcaatagaattcacttctttgtaagcaagctccacaatcatttgagtacttaaatcaagacaaactagttctttatctt 9587613  T
Q  318 ttctgatgacgaatatttctccttttgtccccactccgataggacgctc 366  Q
     |||||||||||||||||||||||| || |||||||| |||||||||||    
T  9587614 gtctgatgacgaatatttctcctttcgttcccactccaataggacgctc 9587662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 18 - 366
Target Start/End: Original strand, 9602207 - 9602569
Alignment:
Q  18 gatgagccaaaaacagaaccacataagcatcagcgacgatacaaggataatggcccgctaccgattaaagcaatctccaggattccagtagacaagacac 117  Q
    ||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||| || ||||| | ||||||||||    
T  9602207 gatgagccaaaaacaaaaccatatatgcatcagcgacgatacaaggataatggcccgctaccgatttaagaaatctccggggttccaattgacaagacac 9602306  T
Q  118 tttgcatacaaggtaatatcccaatcaccataat-------cattttgctcctggtgaaaacaagaaaaataactaattacttattcctccaattggaag 210  Q
    ||||||||||||||||||||||||||||   |||       |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9602307 tttgcatacaaggtaatatcccaatcactgcaatcattttgcattttgctcctggtgaaaacaagaaaaataactaattacttattcctccgattggaag 9602406  T
Q  211 aatgttttccttgtacattactat-------ccgatcaatggaattcacttctttgtaagcaagctccacaatcatttgagtacttaaatcaaaacaaac 303  Q
    ||||||||||||||| |||| |||        |||||||| ||||||||||||||||||| ||||||||||| |  ||||||||||||||||| ||||||    
T  9602407 aatgttttccttgtatattagtattcgatcgacgatcaatagaattcacttctttgtaagaaagctccacaaccgattgagtacttaaatcaagacaaac 9602506  T
Q  304 tagctctttatcttttctgatgacgaatatttctccttttgtccccactccgataggacgctc 366  Q
    ||  |||||||||| ||||||||| ||||||||||||||  |||| || ||||||||||||||    
T  9602507 tacttctttatcttctctgatgacaaatatttctcctttcatcccaaccccgataggacgctc 9602569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 178 - 366
Target Start/End: Complemental strand, 9569473 - 9569285
Alignment:
Q  178 aaataactaattacttattcctccaattggaagaatgttttccttgtacattactatccgatcaatggaattcacttctttgtaagcaagctccacaatc 277  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||| |||||||||||||||||| ||||||||||||||    
T  9569473 aaataactaattacttattcctccaattggaagaatattttccttgtatattactatcctatcaatagaattcacttctttgtaaacaagctccacaatc 9569374  T
Q  278 atttgagtacttaaatcaaaacaaactagctctttatcttttctgatgacgaatatttctccttttgtccccactccgataggacgctc 366  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9569373 atttgagtacttaaatcaatacaaactagctctttatcttttctgatgacgaatatttctccttttgtccccactccgataggacgctc 9569285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 9569805 - 9569616
Alignment:
Q  1 ccagaaaaatagacccggatgagccaaaaacagaaccacataagcatcagcgacgatacaaggataatggcccgctaccgattaaagcaatctccaggat 100  Q
    ||||||||| ||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9569805 ccagaaaaacagacctggattagccaaaa-cagaaccacataagcatcagcgacgatacaaggataatggcccgctaccgattaaagcaatctccaggat 9569707  T
Q  101 tccagtagacaagacactttgcatacaaggtaatatcccaatcaccataatcattttgctcctggtgaaaacaagaaaaataactaattactt 193  Q
    |||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  9569706 tcc--tagacaagacactttgcatacaaggtaatatcccaatcaccacaatcattttgctcctcgtgaaaacaagaaaaataactaattactt 9569616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 9606092 - 9606190
Alignment:
Q  18 gatgagccaaaaacagaaccacataagcatcagcgacgatacaaggataatggcccgctaccgattaaagcaatctccaggattccagtagacaagaca 116  Q
    ||||||||||||||||||  |||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||  ||||| | | |||||||||    
T  9606092 gatgagccaaaaacagaaggacataagcatcagcaacgatacaaggataatggctcgctaccgattcaagcaatctccgagattctaattgacaagaca 9606190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 238
Target Start/End: Complemental strand, 37898245 - 37898132
Alignment:
Q  125 acaaggtaatatcccaatcaccataatcattttgctcctggtgaaaacaagaaaaataactaattacttattcctccaattggaagaatgttttccttgt 224  Q
    |||||| ||||||||||| |||| ||||| ||  ||| ||||||||||||||| |   | |||||||||  |||||||| || ||||||||||||| |||    
T  37898245 acaaggcaatatcccaataaccacaatcaattacctcttggtgaaaacaagaatagccattaattacttgctcctccaactgtaagaatgttttccatgt 37898146  T
Q  225 acattactatccga 238  Q
    | |||| |||||||    
T  37898145 atattattatccga 37898132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 366
Target Start/End: Original strand, 54294963 - 54295065
Alignment:
Q  264 caagctccacaatcatttgagtacttaaatcaaaacaaactagctctttatcttttctgatgacgaatatttctccttttgtccccactccgataggacg 363  Q
    |||||||| ||||||||||  |||  ||||||||  || |||  |||||||||||||| | || ||||||||| || || |||||||||||||||||| |    
T  54294963 caagctcctcaatcatttggctacacaaatcaaacaaagctacttctttatcttttcttacgaagaatatttcccccttcgtccccactccgataggatg 54295062  T
Q  364 ctc 366  Q
    |||    
T  54295063 ctc 54295065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 237
Target Start/End: Complemental strand, 54291150 - 54291085
Alignment:
Q  170 aacaagaaaaataactaattacttattcctccaattggaagaatgttttccttgtacattactatccg 237  Q
    ||||||||||| || |||||||  |||| |||||| |||||||||||||||||||| |||| ||||||    
T  54291150 aacaagaaaaacaattaattac--attcttccaatgggaagaatgttttccttgtatattattatccg 54291085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 366
Target Start/End: Complemental strand, 9571934 - 9571884
Alignment:
Q  316 ttttctgatgacgaatatttctccttttgtccccactccgataggacgctc 366  Q
    |||||| |||| ||||||||||||||| |||||||||| ||||||| ||||    
T  9571934 ttttcttatgaagaatatttctcctttcgtccccactctgataggatgctc 9571884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 5e-44; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 116 - 366
Target Start/End: Complemental strand, 29131650 - 29131401
Alignment:
Q  116 actttgcatacaaggtaatatcccaatcaccataatcattttgctcctggtgaaaacaagaaaaataactaattacttattcctccaattggaagaatgt 215  Q
    |||||| ||||||||||||| |||||| |||  ||||||||| ||||  ||||||||| ||| || ||||| |||||| |||||||||||||||||||||    
T  29131650 actttgaatacaaggtaatagcccaatgaccgcaatcattttcctcccagtgaaaacaggaagaa-aactacttacttgttcctccaattggaagaatgt 29131552  T
Q  216 tttccttgtacattactatccgatcaatggaattcacttctttgtaagcaagctccacaatcatttgagtacttaaatcaaaacaaactagctctttatc 315  Q
    | |||||||| |||| |||||||  | |   |  |||| |||||||| ||||| || ||||  |||| |||||||||||||  |||||||| |||| |||    
T  29131551 tatccttgtatattattatccgactagtatgacccactcctttgtaaccaagccccgcaattctttgcgtacttaaatcaagccaaactagttcttcatc 29131452  T
Q  316 ttttctgatgacgaatatttctccttttgtccccactccgataggacgctc 366  Q
    |||||| | || ||||||||||||||||||||||||||| |||||||||||    
T  29131451 ttttcttaggaagaatatttctccttttgtccccactccaataggacgctc 29131401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 255 - 365
Target Start/End: Complemental strand, 29013036 - 29012926
Alignment:
Q  255 ctttgtaagcaagctccacaatcatttgagtacttaaatcaaaacaaactagctctttatcttttctgatgacgaatatttctccttttgtccccactcc 354  Q
    |||| ||| ||| |||| |||||||||| ||||| |||||||  |||||||| |||| |||||||||||||| ||||||||||||||| |||||||||||    
T  29013036 ctttataaccaacctcctcaatcatttgggtactcaaatcaagccaaactagttcttcatcttttctgatgaagaatatttctcctttcgtccccactcc 29012937  T
Q  355 gataggacgct 365  Q
    |||||||||||    
T  29012936 gataggacgct 29012926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 127 - 363
Target Start/End: Original strand, 32740477 - 32740696
Alignment:
Q  127 aaggtaatatcccaatcaccataatcattttgctcctggtgaaaacaagaaaaataactaattacttattcctccaattggaagaatgttttccttgtac 226  Q
    |||||||||||||||| |||  ||||||||| ||||  |||||||||||||||| |||||||||||| ||||||||||| ||||||| || |||| |||     
T  32740477 aaggtaatatcccaatgaccgaaatcattttcctcccagtgaaaacaagaaaaaaaactaattacttgttcctccaatttgaagaatattatcctcgtat 32740576  T
Q  227 attactatccgatcaatggaattcacttctttgtaagcaagctccacaatcatttgagtacttaaatcaaaacaaactagctctttatcttttctgatga 326  Q
    |||| |||||||                  | |||| |||||||| ||||| |||| |||| ||||||||  |||||||| |||| ||||||||| | ||    
T  32740577 attattatccga-----------------ctagtaaccaagctccgcaatcctttgtgtacataaatcaagccaaactagttcttcatcttttcttagga 32740659  T
Q  327 cgaatatttctccttttgtccccactccgataggacg 363  Q
     ||||||||||||||| ||||||||||| ||||||||    
T  32740660 agaatatttctcctttcgtccccactccaataggacg 32740696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 264 - 366
Target Start/End: Original strand, 29152012 - 29152114
Alignment:
Q  264 caagctccacaatcatttgagtacttaaatcaaaacaaactagctctttatcttttctgatgacgaatatttctccttttgtccccactccgataggacg 363  Q
    |||||||| |||||||||||||||| | |||||| ||| |||  |||||||||||||| || | ||||||||| || ||| |||||||||||||||||||    
T  29152012 caagctcctcaatcatttgagtactcagatcaaaccaagctacttctttatcttttcttataaagaatatttccccatttttccccactccgataggacg 29152111  T
Q  364 ctc 366  Q
    |||    
T  29152112 ctc 29152114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 273 - 366
Target Start/End: Complemental strand, 34282104 - 34282011
Alignment:
Q  273 caatcatttgagtacttaaatcaaaacaaactagctctttatcttttctgatgacgaatatttctccttttgtccccactccgataggacgctc 366  Q
    |||||||||| ||||| |||||||| ||| | |  |||||||||||||| |||| ||||||||| || ||||||||||||||||||||||||||    
T  34282104 caatcatttgggtactcaaatcaaaccaagccacttctttatcttttcttatgaagaatatttccccctttgtccccactccgataggacgctc 34282011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 264 - 363
Target Start/End: Complemental strand, 29124343 - 29124244
Alignment:
Q  264 caagctccacaatcatttgagtacttaaatcaaaacaaactagctctttatcttttctgatgacgaatatttctccttttgtccccactccgataggacg 363  Q
    |||||||| |||||||||| ||||| |||||||| ||| |||| |||||||||||||| |||| ||||||||| || ||  | |||||||| ||||||||    
T  29124343 caagctcctcaatcatttgggtactcaaatcaaaccaagctagttctttatcttttctaatgaagaatatttcccccttcatacccactccaataggacg 29124244  T

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Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 264 - 366
Target Start/End: Complemental strand, 29137477 - 29137375
Alignment:
Q  264 caagctccacaatcatttgagtacttaaatcaaaacaaactagctctttatcttttctgatgacgaatatttctccttttgtccccactccgataggacg 363  Q
    |||||||| | |||||||| |||||||||||||| ||| |||| ||||||||||||||  | | | ||||||| || |||||||||||||| | ||||||    
T  29137477 caagctcctcgatcatttgggtacttaaatcaaaccaagctagttctttatcttttcttgtaaaggatatttccccctttgtccccactccaaaaggacg 29137378  T
Q  364 ctc 366  Q
    |||    
T  29137377 ctc 29137375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 264 - 366
Target Start/End: Original strand, 34278330 - 34278432
Alignment:
Q  264 caagctccacaatcatttgagtacttaaatcaaaacaaactagctctttatcttttctgatgacgaatatttctccttttgtccccactccgataggacg 363  Q
    |||||||| ||||||| ||  |||| |||||||| ||| |||  |||||||||||| | |||| ||||||||  || |||||||||||||||||||||||    
T  34278330 caagctcctcaatcatatggatactcaaatcaaaccaagctacttctttatcttttattatgaagaatattttcccctttgtccccactccgataggacg 34278429  T
Q  364 ctc 366  Q
    |||    
T  34278430 ctc 34278432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 264 - 366
Target Start/End: Original strand, 32960616 - 32960718
Alignment:
Q  264 caagctccacaatcatttgagtacttaaatcaaaacaaactagctctttatcttttctgatgacgaatatttctccttttgtccccactccgataggacg 363  Q
    |||||| |||||||||||| ||||  ||||||||  ||||||  |||| ||||||||| |||| ||||||||| || ||  |||||||||| ||||||||    
T  32960616 caagcttcacaatcatttgggtacccaaatcaaacaaaactaattcttcatcttttcttatgaagaatatttcccccttcttccccactcccataggacg 32960715  T
Q  364 ctc 366  Q
    |||    
T  32960716 ctc 32960718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 118 - 230
Target Start/End: Complemental strand, 29145637 - 29145525
Alignment:
Q  118 tttgcatacaaggtaatatcccaatcaccataatcattttgctcctggtgaaaacaagaaaaataactaattacttattcctccaattggaagaatgttt 217  Q
    |||||||| || |||||||| |||  |||| |||||| |  ||| |||||| ||||||||||| || ||  |||||  |||||||||||||||||||| |    
T  29145637 tttgcataaaatgtaatatctcaacaaccacaatcatatacctcttggtgataacaagaaaaacaattagctacttgctcctccaattggaagaatgtat 29145538  T
Q  218 tccttgtacatta 230  Q
    |||||||| ||||    
T  29145537 tccttgtatatta 29145525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 289 - 351
Target Start/End: Original strand, 19697377 - 19697439
Alignment:
Q  289 taaatcaaaacaaactagctctttatcttttctgatgacgaatatttctccttttgtccccac 351  Q
    |||||||| ||||||||| |||| ||  ||||| |||| ||||||||||||||||||||||||    
T  19697377 taaatcaagacaaactagttcttcattctttctaatgaagaatatttctccttttgtccccac 19697439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 350
Target Start/End: Original strand, 34258133 - 34258223
Alignment:
Q  260 taagcaagctccacaatcatttgagtacttaaatcaaaacaaactagctctttatcttttctgatgacgaatatttctccttttgtcccca 350  Q
    |||||||||||| ||||| |||| || || |||| ||| ||| |||| | |||||||||||| |||| ||||||||| || ||||||||||    
T  34258133 taagcaagctcctcaatcgtttgggtgctcaaattaaaccaagctagttttttatcttttcttatgaagaatatttccccctttgtcccca 34258223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 326
Target Start/End: Original strand, 25519875 - 25519937
Alignment:
Q  264 caagctccacaatcatttgagtacttaaatcaaaacaaactagctctttatcttttctgatga 326  Q
    |||||||| |||||||||||| ||| |||||||| |||||||  ||| |||||||||| ||||    
T  25519875 caagctcctcaatcatttgagcactcaaatcaaaccaaactacttctctatcttttcttatga 25519937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 116 - 366
Target Start/End: Complemental strand, 42446680 - 42446430
Alignment:
Q  116 actttgcatacaaggtaatatcccaatcaccataatcattttgctcctggtgaaaacaagaaaaataactaattacttattcctccaattggaagaatgt 215  Q
    |||||| ||||||||||||||| |||  |||| |||||| |  ||| |||||||||||||||||| || |||||| ||||||||||||||||||||||||    
T  42446680 actttgtatacaaggtaatatctcaagaaccacaatcatatacctcttggtgaaaacaagaaaaacaattaattaattattcctccaattggaagaatgt 42446581  T
Q  216 tttccttgtacattactatccgatcaatggaattcacttctttgtaagcaagctccacaatcatttgagtacttaaatcaaaacaaactagctctttatc 315  Q
    |||||||||| |||| || |||| || | | |  | || |||| ||| ||||| || ||||||| |  |||||||||||||  ||| |||| |||  |||    
T  42446580 tttccttgtatattattacccgagcagtaggaccccctcctttataaccaagcccctcaatcatcttggtacttaaatcaagccaagctagttctccatc 42446481  T
Q  316 ttttctgatgacgaatatttctccttttgtccccactccgataggacgctc 366  Q
    |||||| |||| |||||||||||||||  |||||||| |||||||||||||    
T  42446480 ttttctaatgaagaatatttctcctttcatccccacttcgataggacgctc 42446430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 366
Target Start/End: Complemental strand, 7794015 - 7793913
Alignment:
Q  264 caagctccacaatcatttgagtacttaaatcaaaacaaactagctctttatcttttctgatgacgaatatttctccttttgtccccactccgataggacg 363  Q
    |||||||  |||||||||| ||||||| ||||||  | ||||  ||| | ||||||||   || ||||||||| ||||| ||||||||||| ||||||||    
T  7794015 caagctcttcaatcatttgggtacttagatcaaacaatactaattctctgtcttttctttggaagaatatttcccctttcgtccccactccaataggacg 7793916  T
Q  364 ctc 366  Q
    |||    
T  7793915 ctc 7793913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 115 - 366
Target Start/End: Original strand, 39551 - 39803
Alignment:
Q  115 cactttgcatacaaggtaatatcc-caatcaccataatcattttgctcctggtgaaaacaagaaaaataactaattacttattcctccaattggaagaat 213  Q
    ||||||||| |||||||||||| | |||| ||||  ||||| |  ||| ||||||||||||||||||||| ||||||||||||||| |||||  ||||||    
T  39551 cactttgcacacaaggtaatattctcaataaccacgatcatatacctcttggtgaaaacaagaaaaataattaattacttattccttcaattacaagaat 39650  T
Q  214 gttttccttgtacattactatccgatcaatggaattcacttctttgtaagcaagctccacaatcatttgagtacttaaatcaaaacaaactagctcttta 313  Q
    |||||||||||| | |  |||||||  |   | |  |  | |||| ||| |||||||  |||||| ||| ||||||| |||||| ||| |||  || |||    
T  39651 gttttccttgtatagtgatatccgagtataaggaccccttgctttataaccaagctcttcaatcacttgggtacttagatcaaaccaagctaattcatta 39750  T
Q  314 tcttttctgatgacgaatatttctccttttgtccccactccgataggacgctc 366  Q
    ||||||||   || ||| ||||| |||||||||||||||||||||||||||||    
T  39751 tcttttctttggaagaaaatttccccttttgtccccactccgataggacgctc 39803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 115 - 225
Target Start/End: Original strand, 33200 - 33311
Alignment:
Q  115 cactttgcatacaaggtaata-tcccaatcaccataatcattttgctcctggtgaaaacaagaaaaataactaattacttattcctccaattggaagaat 213  Q
    ||||||||| ||||||||||| || |||| |||| |||||| |  ||| ||||||||||| ||||||||| ||||||||||||||| |||| | ||||||    
T  33200 cactttgcacacaaggtaataatctcaataaccacaatcatatacctcttggtgaaaacatgaaaaataattaattacttattccttcaatggcaagaat 33299  T
Q  214 gttttccttgta 225  Q
    ||||||||||||    
T  33300 gttttccttgta 33311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 117 - 362
Target Start/End: Original strand, 15966 - 16206
Alignment:
Q  117 ctttgcatacaaggtaatatcccaatcaccataatcattttgctcctggtgaaaacaagaaaaataactaattacttattcctccaattggaagaatgtt 216  Q
    |||||||| |||||||||||| |||| ||||||||||| |  ||| ||| || || ||||||      ||||||  ||||||||||  || |||||||||    
T  15966 ctttgcatccaaggtaatatctcaataaccataatcatatacctcttggagataaaaagaaat-----taattaactattcctccatctgtaagaatgtt 16060  T
Q  217 ttccttgtacattactatccgatcaatggaattcacttctttgtaagcaagctccacaatcatttgagtacttaaatcaaaacaaactagctctttatct 316  Q
    | ||||||| |||| ||||||| ||    ||| | || |||| ||| |||| ||| |||||||||||||| | | |||||| ||| |||  |||| |||     
T  16061 taccttgtatattattatccgagcacaacaatcccctgctttataaccaagttcctcaatcatttgagtattaagatcaaaccaagctaattcttcatcc 16160  T
Q  317 tttctgatgacgaatatttctccttttgtccccactccgataggac 362  Q
    |||||   || ||||| ||| |||||||||||||||||||||||||    
T  16161 tttctttggaagaataattccccttttgtccccactccgataggac 16206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0613 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0613
Description:

Target: scaffold0613; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 361
Target Start/End: Complemental strand, 534 - 295
Alignment:
Q  116 actttgcatacaaggtaatatcccaatcaccataatcattttgctcctggtgaaaacaagaaaaataactaattacttattcctccaattggaagaatgt 215  Q
    |||||||||||||||||||||| |||| ||||||||||| |  ||| ||| |||||  |||     || ||||||| |||||||||| ||  ||||||||    
T  534 actttgcatacaaggtaatatctcaataaccataatcatatacctcttggagaaaa-taga-----aattaattacctattcctccattttcaagaatgt 441  T
Q  216 tttccttgtacattactatccgatcaatggaattcacttctttgtaagcaagctccacaatcatttgagtacttaaatcaaaacaaactagctctttatc 315  Q
    |||||||||| |||| |||||||  |    ||| | || |||| ||| |||| ||| ||||||||||||||   | |||||| ||| |||  |||| |||    
T  440 tttccttgtatattattatccgagtacgacaatcccctgctttataaccaagttcctcaatcatttgagtatgaagatcaaaccaagctaattcttcatc 341  T
Q  316 ttttctgatgacgaatatttctccttttgtccccactccgatagga 361  Q
     |||||   || ||||| ||| |||||| |||||||||||||||||    
T  340 ctttctttggaagaataattccccttttttccccactccgatagga 295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 192 - 239
Target Start/End: Complemental strand, 32643216 - 32643169
Alignment:
Q  192 ttattcctccaattggaagaatgttttccttgtacattactatccgat 239  Q
    ||||||| ||||||||||||| |||||||||||| | |||||||||||    
T  32643216 ttattccaccaattggaagaaggttttccttgtaaactactatccgat 32643169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 234
Target Start/End: Complemental strand, 43323054 - 43323012
Alignment:
Q  192 ttattcctccaattggaagaatgttttccttgtacattactat 234  Q
    ||||||||||||||||||| |||||||||||||| ||| ||||    
T  43323054 ttattcctccaattggaagcatgttttccttgtaaattcctat 43323012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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