View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5110_low_38 (Length: 372)
Name: NF5110_low_38
Description: NF5110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5110_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 37299731 - 37300087
Alignment:
| Q |
1 |
atcagcaattactggttacgtcttgttgtatttgttgccattgctataagcctaggctctatcttctaccaagtcggttcaagtactcgatctattcagg |
100 |
Q |
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| T |
37299731 |
atcagcaattactggttacgtcttgtagtctttgttgccattgctataagcctaggctctatcttttaccaagtcggttcaagtactcgatctattcagg |
37299830 |
T |
|
| Q |
101 |
taaaatacgaaatgataatgaaagcatgctttaaaagaaaattaacttttaattatataatgtaacaatcattagtattaaatttaataaaaatgctagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
37299831 |
taaaatacgaaatgataatgaaagcatgctttaaaagaaaattaacttttaattatataatgtaacaatcattaatattaaatttcataaaaatgctagc |
37299930 |
T |
|
| Q |
201 |
aacatattcttccttatcatttgaaaattcatataagttctgctaattttaatatagaacctagaaaatttagtggaaccaatgtcaataacaaact-nn |
299 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37299931 |
aacatattcttccttatcatttg-aaattcatataagttctgctaattttaatatagaacctagaaaatttagtggaaccaatgtcaattacaaactgta |
37300029 |
T |
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| Q |
300 |
nnnnnttgtgtcaaaagaagtatattagagaatatattaccagcactccgagtgattt |
357 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
37300030 |
aaaaattgtgtcaaaagaagtatattagataatatattaccagcactccgagtgattt |
37300087 |
T |
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